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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Complex partial epilepsy Familial focal epilepsy with variable foci
1 gene
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1 of 1 corroborated by 2+ sources
SCN3A(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Complex regional pain syndrome primary ciliary dyskinesia 28
1 gene
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1 of 1 corroborated by 2+ sources
SPAG1(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Congenital cataract anterior segment dysgenesis syndrome Posterior polar cataract
1 gene
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1 of 1 corroborated by 2+ sources
PITX3(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
B-cell chronic lymphocytic leukemia Congenital chromosomal disease
1 gene
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1 of 1 corroborated by 2+ sources
POT1(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Congenital chromosomal disease Hoyeraal hreidarsson syndrome
1 gene
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POT1(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Congenital cleft hand Rubinstein-taybi syndrome
1 gene
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DLX5(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 249 →
Congenital cleft hand Split hand-foot malformation
1 gene
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1 of 1 corroborated by 2+ sources
DLX5(7)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Congenital digestive system anomaly Congenital hypoplasia of kidney
1 gene
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RET(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 152 →
Campomelic dysplasia Congenital hand deformities
1 gene
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1 of 1 corroborated by 2+ sources
SOX9(6)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Camptomelic dysplasia Congenital hand deformities
1 gene
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1 of 1 corroborated by 2+ sources
SOX9(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Congenital hand deformities Cooks syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOX9(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Congenital hereditary facial paralysis with variable hearing loss syndrome Facial nerve disorder
1 gene
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1 of 1 corroborated by 2+ sources
HOXB1(5)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 313 →
Congenital hernia of foramen of bochdalek Visual impairment
1 gene
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1 of 1 corroborated by 2+ sources
EFEMP1(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 146 →
Congenital high-molecular-weight kininogen deficiency Occupational dermatitis
1 gene
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1 of 1 corroborated by 2+ sources
KNG1(5)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 250 →
Congenital hyperammonemia Urea cycle disorder
1 gene
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CPS1(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Congenital hyperammonemia Hyperammonemia
1 gene
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1 of 1 corroborated by 2+ sources
CPS1(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Congenital hypoplasia of kidney Papillorenal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PAX2(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Congenital hypoplasia of kidney focal segmental glomerulosclerosis 7
1 gene
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1 of 1 corroborated by 2+ sources
PAX2(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Congenital hypoplasia of kidney Medullary thyroid cancer
1 gene
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1 of 1 corroborated by 2+ sources
RET(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 152 →
Congenital intrinsic factor deficiency Pernicious anemia
1 gene
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1 of 1 corroborated by 2+ sources
CBLIF(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Congenital isolated acth deficiency Duodenitis
1 gene
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1 of 1 corroborated by 2+ sources
TBX19(5)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 1 →
HAVCR2-related cancer predisposition Hemophagocytic lymphohistiocytosis
1 gene
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1 of 1 corroborated by 2+ sources
HAVCR2(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Hemoglobin high altitude adaptation Secondary polycythemia
1 gene
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1 of 1 corroborated by 2+ sources
EGLN1(6)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Hemophagocytic lymphohistiocytosis Reducing body myopathy
1 gene
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1 of 1 corroborated by 2+ sources
FHL1(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Hemophagocytic lymphohistiocytosis Uruguay faciocardio-musculoskeletal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FHL1(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.