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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Basal ganglia disease hereditary hyperferritinemia with congenital cataracts
1 gene
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1 of 1 corroborated by 2+ sources
FTL(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
hereditary sensory and autonomic neuropathy type 4 Sensory neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
NTRK1(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 169 →
hereditary thrombocytopenia and hematologic cancer predisposition syndrome Platelet disorder
1 gene
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1 of 1 corroborated by 2+ sources
RUNX1(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Homocystinuria Hyperhomocysteinemia
1 gene
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1 of 1 corroborated by 2+ sources
CBS(5)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Esophageal stenosis Hyperbilirubinemia
1 gene
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1 of 1 corroborated by 2+ sources
SOD2(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
hypomyelinating leukodystrophy 2 Lymphatic malformation
1 gene
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1 of 1 corroborated by 2+ sources
GJC2(6)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Arthrogryposis with anterior horn cell disease Lethal congenital contracture syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GLE1(6)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Ataxia with polyneuropathy Neuropathy, ataxia, and retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
ATP6(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Atypical fanconi syndrome Maturity-onset diabetes of the young
1 gene
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1 of 1 corroborated by 2+ sources
HNF4A(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Agammaglobulinemia autosomal agammaglobulinemia
1 gene
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1 of 1 corroborated by 2+ sources
TCF3(4)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 181 →
autosomal recessive osteopetrosis 2 Hypercalcemia
1 gene
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1 of 1 corroborated by 2+ sources
TNFSF11(3)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 262 →
bardet-biedl syndrome 16 Senior-loken syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SDCCAG8(6)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 8 →
Beta-propeller protein-associated neurodegeneration Oculocutaneous albinism
1 gene
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1 of 1 corroborated by 2+ sources
WDR45(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
fanconi anemia complementation group e Omphalocele exstrophy imperforate anus
1 gene
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1 of 1 corroborated by 2+ sources
FANCE(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 27 →
FLVCR1-related retinopathy with or without ataxia Sensory neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
FLVCR1(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
focal segmental glomerulosclerosis 4, susceptibility to Steroid-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
APOL1(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
focal segmental glomerulosclerosis 9 Steroid-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CRB2(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Byzanthine arch palate Fowler syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FLVCR2(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Congenital abnormalities fragile x syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FMR1(3)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Basal ganglia disease Genetic hyperferritinemia without iron overload
1 gene
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1 of 1 corroborated by 2+ sources
FTL(3)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Achondroplasia Giant cell glioblastoma
1 gene
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1 of 1 corroborated by 2+ sources
FGFR3(3)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Camptodactyly, tall stature, and hearing loss syndrome Giant cell glioblastoma
1 gene
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1 of 1 corroborated by 2+ sources
FGFR3(5)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Glycine n-methyltransferase deficiency Hyperhomocysteinemia
1 gene
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1 of 1 corroborated by 2+ sources
GNMT(6)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Glycoprotein vi deficiency Platelet disorder
1 gene
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GP6(1)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
CEP164-related ciliopathy Senior-loken syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CEP164(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 8 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.