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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Congenital nephrotic syndrome Hyperhomocysteinemia
1 gene
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1 of 1 corroborated by 2+ sources
NPHS1(4)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Congenital nephrotic syndrome Steroid-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NPHS1(4)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Congenital primary lymphedema of gordon Lymphatic malformation
1 gene
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1 of 1 corroborated by 2+ sources
VEGFC(6)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Craniofacial deafness hand syndrome Waardenburg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PAX3(7)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 229 →
craniosynostosis 2 Posterior cortical atrophy
1 gene
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1 of 1 corroborated by 2+ sources
MSX2(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 93 →
Cryptogenic multifocal ulcerous stenosing enteritis Platelet disorder
1 gene
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1 of 1 corroborated by 2+ sources
PLA2G4A(3)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Basal ganglia disease Cyp2d6 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CYP2D6(3)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Cyp2d6 deficiency Occupational disease
1 gene
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1 of 1 corroborated by 2+ sources
CYP2D6(3)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Cystic kidney disease with ventriculomegaly Steroid-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CRB2(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Cytosolic phospholipase-a2 alpha deficiency associated bleeding disorder Platelet disorder
1 gene
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1 of 1 corroborated by 2+ sources
PLA2G4A(5)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Deaf blind hypopigmentation syndrome Waardenburg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOX10(8)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Retinopathy-sensory neuropathy syndrome Sensory neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
FLVCR1(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Lethal congenital contracture syndrome Rigidity and multifocal seizure syndrome, lethal neonatal
1 gene
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1 of 1 corroborated by 2+ sources
BRAT1(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Progressive external ophthalmoplegia Rod-cone dystrophy, sensorineural deafness, and fanconi-type renal dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
RRM2B(5)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Oculocutaneous albinism Rufous oculocutaneous albinism
1 gene
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1 of 1 corroborated by 2+ sources
TYRP1(4)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 298 →
schimke immuno-osseous dysplasia Steroid-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Hyperbilirubinemia severe combined immunodeficiency due to IKK2 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
IKBKB(3)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Spinocerebellar ataxia blindness deafness syndrome Zellweger spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
PEX6(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
spondyloepiphyseal dysplasia with congenital joint dislocations Vertebral column disorder
1 gene
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1 of 1 corroborated by 2+ sources
CHST3(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Basal ganglia disease Striatal neurodegeneration
1 gene
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1 of 1 corroborated by 2+ sources
PDE8B(5)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 390 →
Developmental delay with autism spectrum disorder Macular and posterior pole degeneration
1 gene
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1 of 1 corroborated by 2+ sources
HERC2(4)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Costello syndrome dilated cardiomyopathy 1D
1 gene
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1 of 1 corroborated by 2+ sources
TNNT2(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
dilated cardiomyopathy 1I Hyperhomocysteinemia
1 gene
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1 of 1 corroborated by 2+ sources
DES(3)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Dubin-johnson syndrome Hyperbilirubinemia
1 gene
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1 of 1 corroborated by 2+ sources
ABCC2(6)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Early-onset hypertension with severe exacerbation in pregnancy Pseudohypoparathyroidism
1 gene
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1 of 1 corroborated by 2+ sources
NR3C2(3)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.