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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Testicular disease Wilson disease
1 gene
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1 of 1 corroborated by 2+ sources
ATP7B(7)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Congenital hypothyroidism X-linked central congenital hypothyroidism with late-onset testicular enlargement
1 gene
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1 of 1 corroborated by 2+ sources
IGSF1(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 88 →
Testicular disease X-linked central congenital hypothyroidism with late-onset testicular enlargement
1 gene
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1 of 1 corroborated by 2+ sources
IGSF1(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 88 →
Hemochromatosis X-linked erythropoietic protoporphyria
1 gene
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1 of 1 corroborated by 2+ sources
ALAS2(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Partington syndrome X-linked female restricted facial dysmorphism, short stature, choanal atresia, intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
USP9X(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 320 →
Partington syndrome X-linked myopathy with excessive autophagy
1 gene
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1 of 1 corroborated by 2+ sources
RPL10(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 320 →
Intestinal disease Yao syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NOD2(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 382 →
Cleft palate and bilateral cleft lip Zunich neuroectodermal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PIGL(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Hemochromatosis hemochromatosis type 2A
1 gene
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1 of 1 corroborated by 2+ sources
HJV(6)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 135 →
Hemochromatosis hemochromatosis type 2B
1 gene
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1 of 1 corroborated by 2+ sources
HAMP(6)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 135 →
Hemochromatosis hemochromatosis type 3
1 gene
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1 of 1 corroborated by 2+ sources
TFR2(6)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 135 →
Hemochromatosis hemochromatosis type 5
1 gene
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1 of 1 corroborated by 2+ sources
FTH1(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Hemochromatosis Hemosiderosis
1 gene
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1 of 1 corroborated by 2+ sources
CP(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Hepatic lipase deficiency Hyperemia
1 gene
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1 of 1 corroborated by 2+ sources
LIPC(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
hereditary hyperferritinemia with congenital cataracts Neurodegeneration with brain iron accumulation
1 gene
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1 of 1 corroborated by 2+ sources
FTL(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
hereditary spastic paraplegia 35 Neurodegeneration with brain iron accumulation
1 gene
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1 of 1 corroborated by 2+ sources
FA2H(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 92 →
hereditary thrombocytopenia and hematologic cancer predisposition syndrome Pancytopenia
1 gene
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1 of 1 corroborated by 2+ sources
RUNX1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Hydrops with lactic acidosis and sideroblastic anemia Perrault syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LARS2(7)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 336 →
Hemochromatosis Hypochromic anemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC11A2(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Ichthyosis vulgaris Sebaceous gland disease
1 gene
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1 of 1 corroborated by 2+ sources
FLG(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 162 →
Distal myopathy IMPG1-related dominant retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
IMPG1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 303 →
Distal myopathy IMPG1-related recessive retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
IMPG1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 303 →
Distal myopathy IMPG2-related recessive retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
IMPG2(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 303 →
Distal myopathy inclusion body myopathy with Paget disease of bone and frontotemporal dementia
1 gene
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1 of 1 corroborated by 2+ sources
VCP(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Intellectual developmental disorder microcephaly cerebellar Partington syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CASK(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 320 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.