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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
primary ciliary dyskinesia 32 Systemic lupus erythematosus
1 gene
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1 of 1 corroborated by 2+ sources
RSPH3(2)
0.002 1.000 4.25e-2 4.43e-2 ✓ sig. —
3-hydroxyisobutyryl-coa hydrolase deficiency Systemic lupus erythematosus
1 gene
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1 of 1 corroborated by 2+ sources
HIBCH(3)
0.002 1.000 4.25e-2 4.43e-2 ✓ sig. —
Amish lethal microcephaly Systemic lupus erythematosus
1 gene
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1 of 1 corroborated by 2+ sources
0.002 1.000 4.25e-2 4.43e-2 ✓ sig. —
Congenital adrenal hyperplasia due to 21-hydroxylase deficiency Systemic lupus erythematosus
1 gene
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1 of 1 corroborated by 2+ sources
CYP21A2(5)
0.002 1.000 4.25e-2 4.43e-2 ✓ sig. —
congenital disorder of glycosylation, type 2v Systemic lupus erythematosus
1 gene
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1 of 1 corroborated by 2+ sources
EDEM3(2)
0.002 1.000 4.25e-2 4.43e-2 ✓ sig. —
immunodeficiency 87 and autoimmunity Systemic lupus erythematosus
1 gene
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1 of 1 corroborated by 2+ sources
DEF6(3)
0.002 1.000 4.25e-2 4.43e-2 ✓ sig. —
immunodeficiency, common variable, 7 Systemic lupus erythematosus
1 gene
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1 of 1 corroborated by 2+ sources
CR2(6)
0.002 1.000 4.25e-2 4.43e-2 ✓ sig. —
Intellectual developmental disorder behavioral short stature Systemic lupus erythematosus
1 gene
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1 of 1 corroborated by 2+ sources
PUS7(4)
0.002 1.000 4.25e-2 4.43e-2 ✓ sig. —
Intellectual developmental disorder dysmorphic facial hearing joint Systemic lupus erythematosus
1 gene
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1 of 1 corroborated by 2+ sources
TET3(2)
0.002 1.000 4.25e-2 4.43e-2 ✓ sig. —
Ataxia-pancytopenia syndrome Systemic lupus erythematosus
1 gene
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1 of 1 corroborated by 2+ sources
SAMD9L(5)
0.002 1.000 4.25e-2 4.43e-2 ✓ sig. —
Autoinflammatory-pancytopenia syndrome Systemic lupus erythematosus
1 gene
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1 of 1 corroborated by 2+ sources
DNASE2(4)
0.002 1.000 4.25e-2 4.43e-2 ✓ sig. Cluster 28 →
Beck-fahrner syndrome Systemic lupus erythematosus
1 gene
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1 of 1 corroborated by 2+ sources
TET3(6)
0.002 1.000 4.25e-2 4.43e-2 ✓ sig. —
Benign familial pemphigus Systemic lupus erythematosus
1 gene
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1 of 1 corroborated by 2+ sources
ATP2C1(2)
0.002 1.000 4.25e-2 4.43e-2 ✓ sig. —
Dalmatian hypouricemia Systemic lupus erythematosus
1 gene
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1 of 1 corroborated by 2+ sources
0.002 1.000 4.25e-2 4.43e-2 ✓ sig. —
ehlers-danlos syndrome, musculocontractural type 2 Systemic lupus erythematosus
1 gene
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1 of 1 corroborated by 2+ sources
DSE(2)
0.002 1.000 4.25e-2 4.43e-2 ✓ sig. —
FNIP1-associated syndrome Systemic lupus erythematosus
1 gene
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1 of 1 corroborated by 2+ sources
FNIP1(2)
0.002 1.000 4.25e-2 4.43e-2 ✓ sig. —
glycogen storage disease VI Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
PYGL(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
glycogen storage disorder due to hepatic glycogen synthase deficiency Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
GYS2(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
immunodeficiency 18 Lung cancer
1 gene
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1 of 1 corroborated by 2+ sources
CD3E(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma immunodeficiency 80 with or without congenital cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
MCM10(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Intellectual developmental disorder dysmorphic facial hearing joint Lung cancer
1 gene
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1 of 1 corroborated by 2+ sources
TET3(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Lung cancer Rhizomelic limb shortening with dysmorphic features
1 gene
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1 of 1 corroborated by 2+ sources
PKDCC(5)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma Ruijs-aalfs syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPRTN(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma spondyloepiphyseal dysplasia, kondo-fu type
1 gene
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1 of 1 corroborated by 2+ sources
MBTPS1(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —
Hepatocellular carcinoma systemic lupus erythematosus 17
1 gene
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1 of 1 corroborated by 2+ sources
TLR7(2)
0.002 1.000 4.21e-2 4.40e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.