Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Male reproductive organ cancer Myotonia
1 gene
Show details
SCN4A(1)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 163 →
Male reproductive organ cancer Potassium-aggravated myotonia
1 gene
Show details
1 of 1 corroborated by 2+ sources
SCN4A(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 163 →
Male reproductive organ cancer SCN4A-related myopathy, autosomal recessive
1 gene
Show details
1 of 1 corroborated by 2+ sources
SCN4A(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 163 →
mandibular hypoplasia-deafness-progeroid syndrome Micrognathism
1 gene
Show details
1 of 1 corroborated by 2+ sources
POLD1(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Cutaneous mastocytosis Mast cell leukemia
1 gene
Show details
1 of 1 corroborated by 2+ sources
KIT(3)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Chondrodysplasia mend syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
EBP(6)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Micrognathism Microstomia
1 gene
Show details
LEMD2(1)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
hearing impairment and infertile male syndrome Male reproductive organ cancer
1 gene
Show details
1 of 1 corroborated by 2+ sources
CDC14A(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 163 →
Cutaneous mastocytosis Hemoglobin high altitude adaptation
1 gene
Show details
1 of 1 corroborated by 2+ sources
EGLN1(4)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Hengel maroofian schols syndrome Toxic nodular goiter
1 gene
Show details
1 of 1 corroborated by 2+ sources
BCAS3(4)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Eye abnormalities Hepatic ductular hypoplasia
1 gene
Show details
1 of 1 corroborated by 2+ sources
JAG1(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Complement component deficiency Hereditary c1 esterase inhibitor deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 383 →
Atrioventricular block holt-oram syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
TBX5(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Hodgkin disease hypoparathyroidism-deafness-renal disease syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
GATA3(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
hypopigmentation, organomegaly, and delayed myelination and development Osteopetrosis
1 gene
Show details
1 of 1 corroborated by 2+ sources
CLCN7(7)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Hypotrichosis Palmoplantar keratoderma and congenital alopecia
1 gene
Show details
1 of 1 corroborated by 2+ sources
LSS(5)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Asbestosis Panniculitis
1 gene
Show details
1 of 1 corroborated by 2+ sources
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 245 →
Osteopetrosis platelet-type bleeding disorder 18
1 gene
Show details
1 of 1 corroborated by 2+ sources
RASGRP2(3)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Micrognathism POLD1-related polyposis and colorectal cancer syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
POLD1(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
amyotrophic lateral sclerosis type 1 Prion disease
1 gene
Show details
1 of 1 corroborated by 2+ sources
SOD1(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Familial hematuria-retinal arteriolar tortuosity-contractures syndrome Prion disease
1 gene
Show details
1 of 1 corroborated by 2+ sources
COL4A1(3)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 154 →
Colpocephaly Prion disease
1 gene
Show details
1 of 1 corroborated by 2+ sources
COL4A1(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 154 →
Prion disease Retinal arterial tortuosity
1 gene
Show details
1 of 1 corroborated by 2+ sources
COL4A1(3)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 154 →
Bronchiectasis pseudohypoaldosteronism, type IB1, autosomal recessive
1 gene
Show details
1 of 1 corroborated by 2+ sources
SCNN1A(7)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 95 →
Gaucher disease pyruvate kinase deficiency of red cells
1 gene
Show details
1 of 1 corroborated by 2+ sources
PKLR(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.