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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Chondrodysplasia glyceronephosphate O-acyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GNPAT(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 301 →
1p31p32 microdeletion syndrome Toxic nodular goiter
1 gene
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1 of 1 corroborated by 2+ sources
NFIA(3)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Acid sphingomyelinase deficiency Gaucher disease
1 gene
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1 of 1 corroborated by 2+ sources
SMPD1(3)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Alkuraya-kucinskas syndrome Micrognathism
1 gene
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1 of 1 corroborated by 2+ sources
BLTP1(3)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
alkylglycerone-phosphate synthase deficiency Chondrodysplasia
1 gene
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1 of 1 corroborated by 2+ sources
AGPS(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 301 →
Alopecia universalis Hypotrichosis
1 gene
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HR(1)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Alpha-1 antitrypsin deficiency Asbestosis
1 gene
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1 of 1 corroborated by 2+ sources
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 245 →
Angel-shaped phalangoepiphyseal dysplasia Chondrodysplasia
1 gene
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1 of 1 corroborated by 2+ sources
GDF5(4)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Arginase deficiency Asbestosis
1 gene
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1 of 1 corroborated by 2+ sources
ARG1(5)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Bronchiectasis congenital disorder of glycosylation, type 2v
1 gene
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1 of 1 corroborated by 2+ sources
EDEM3(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 95 →
Congenital hypoplasia of clavicle Micrognathism
1 gene
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LEMD2(1)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Congenital hypotrichosis with juvenile macular dystrophy Hypotrichosis
1 gene
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1 of 1 corroborated by 2+ sources
CDH3(3)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Congenital neutropenia immunodeficiency 76
1 gene
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1 of 1 corroborated by 2+ sources
FCHO1(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 209 →
Hodgkin disease immunodeficiency 92
1 gene
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1 of 1 corroborated by 2+ sources
REL(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Insulin-resistant diabetes mellitus with acanthosis nigricans Toxic nodular goiter
1 gene
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1 of 1 corroborated by 2+ sources
INSR(4)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Cutaneous mastocytosis Intellectual developmental disorder growth seizures
1 gene
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1 of 1 corroborated by 2+ sources
ABCA2(4)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 235 →
Intellectual developmental disorder hypotonia spastic sleep Prion disease
1 gene
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1 of 1 corroborated by 2+ sources
ANK3(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 154 →
Congenital brain malformation Intellectual developmental disorder microcephaly cerebellar
1 gene
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1 of 1 corroborated by 2+ sources
CASK(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Coffin-siris syndrome Intellectual developmental disorder microcephaly ocular
1 gene
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1 of 1 corroborated by 2+ sources
SOX11(6)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Congenital brain malformation joubert syndrome 14
1 gene
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1 of 1 corroborated by 2+ sources
TMEM237(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 110 →
Congenital hypoplasia of part of brain joubert syndrome 14
1 gene
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1 of 1 corroborated by 2+ sources
TMEM237(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 110 →
joubert syndrome 14 Microgyria
1 gene
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1 of 1 corroborated by 2+ sources
TMEM237(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 110 →
Congenital brain malformation joubert syndrome 36
1 gene
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1 of 1 corroborated by 2+ sources
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 110 →
Congenital hypoplasia of part of brain joubert syndrome 36
1 gene
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1 of 1 corroborated by 2+ sources
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 110 →
joubert syndrome 36 Microgyria
1 gene
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1 of 1 corroborated by 2+ sources
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 110 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.