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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Inflammatory bowel disease neurodevelopmental disorder with short stature, prominent forehead, and feeding difficulties
1 gene
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1 of 1 corroborated by 2+ sources
DPH5(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. Cluster 28 →
Crohn disease immunodeficiency 121 with autoinflammation
1 gene
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1 of 1 corroborated by 2+ sources
PSMB10(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
immunodeficiency 121 with autoinflammation Inflammatory bowel disease
1 gene
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1 of 1 corroborated by 2+ sources
PSMB10(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Crohn disease immunodeficiency, common variable, 14
1 gene
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1 of 1 corroborated by 2+ sources
IRF2BP2(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
immunodeficiency, common variable, 14 Inflammatory bowel disease
1 gene
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1 of 1 corroborated by 2+ sources
IRF2BP2(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Crohn disease inflammatory bowel disease 28
1 gene
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1 of 1 corroborated by 2+ sources
IL10RA(3)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Inflammatory bowel disease inflammatory bowel disease 28
1 gene
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1 of 1 corroborated by 2+ sources
IL10RA(5)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Inflammatory bowel disease inflammatory skin and bowel disease, neonatal, 1
1 gene
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1 of 1 corroborated by 2+ sources
ADAM17(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Crohn disease Kindler epidermolysis bullosa
1 gene
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1 of 1 corroborated by 2+ sources
FERMT1(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Inflammatory bowel disease Kindler epidermolysis bullosa
1 gene
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1 of 1 corroborated by 2+ sources
FERMT1(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Crohn disease kindler syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FERMT1(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Inflammatory bowel disease kindler syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FERMT1(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Chromosome 16p11.2 microdeletion syndrome Crohn disease
1 gene
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1 of 1 corroborated by 2+ sources
SH2B1(3)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Chromosome 16p11.2 microdeletion syndrome Inflammatory bowel disease
1 gene
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1 of 1 corroborated by 2+ sources
SH2B1(3)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
FNIP1-associated syndrome Inflammatory bowel disease
1 gene
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1 of 1 corroborated by 2+ sources
FNIP1(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Crohn disease Ehrlich tumor carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. Cluster 28 →
Crohn disease Cystathioninuria
1 gene
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1 of 1 corroborated by 2+ sources
CTH(6)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Cystathioninuria Inflammatory bowel disease
1 gene
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1 of 1 corroborated by 2+ sources
CTH(6)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Crohn disease D-lactic aciduria
1 gene
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1 of 1 corroborated by 2+ sources
LDHD(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Crohn disease D-lactic aciduria with gout
1 gene
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1 of 1 corroborated by 2+ sources
LDHD(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Interferon gamma receptor deficiency Sclerosing cholangitis
1 gene
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1 of 1 corroborated by 2+ sources
IFNGR2(2)
0.004 0.333 4.41e-2 4.60e-2 ✓ sig. —
Tropical calcific pancreatitis Venous thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
SPINK1(6)
0.003 0.500 4.39e-2 4.57e-2 ✓ sig. —
Cortisone reductase deficiency Venous thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
H6PD(6)
0.003 0.500 4.39e-2 4.57e-2 ✓ sig. —
propionic acidemia Venous thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
PCCB(2)
0.003 0.500 4.39e-2 4.57e-2 ✓ sig. —
MHC class II deficiency Oligoarticular juvenile idiopathic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
CIITA(2)
0.006 0.250 4.34e-2 4.52e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.