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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Hepatic veno occlusive disease Pseudo-torch syndrome
1 gene
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1 of 1 corroborated by 2+ sources
OCLN(6)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Leiomyosarcoma Pseudo-torch syndrome
1 gene
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1 of 1 corroborated by 2+ sources
USP18(6)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. Cluster 213 →
Emery-dreifuss muscular dystrophy Estrogen resistance
1 gene
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1 of 1 corroborated by 2+ sources
ESR1(5)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Griscelli syndrome Hereditary elliptocytosis
1 gene
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1 of 1 corroborated by 2+ sources
MYO5A(7)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Congenital bone marrow failure syndrome Shwachman-diamond syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DNAJC21(6)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Congenital anomalies of kidney and urinary tract congenital anomalies of kidney and urinary tract syndrome with or without hearing loss, abnormal ears, or developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
PBX1(5)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Bmp4-related ocular growth disorder Congenital anomalies of kidney and urinary tract
1 gene
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1 of 1 corroborated by 2+ sources
BMP4(3)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Congenital anomalies of kidney and urinary tract Yuksel-vogel-bauer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DLG5(4)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Congenital anomalies of kidney and urinary tract Zhu-tokita-takenouchi-kim syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SON(7)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Congenital anomalies of kidney and urinary tract congenital anomaly of kidney and urinary tract
1 gene
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1 of 1 corroborated by 2+ sources
CHD1L(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Graft-versus-host disease inflammatory bowel disease 25
1 gene
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1 of 1 corroborated by 2+ sources
IL10RB(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Beta thalassemia Intellectual developmental disorder hemoglobin persistence
1 gene
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1 of 1 corroborated by 2+ sources
BCL11A(3)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Brachydactyly Intellectual developmental disorder with retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
SCAPER(4)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Hemorrhagic disease Intracranial germ cell tumor
1 gene
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BAK1(1)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Brachydactyly leber congenital amaurosis 15
1 gene
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1 of 1 corroborated by 2+ sources
TULP1(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 352 →
Epidermolysis bullosa Nephropathy with pretibial epidermolysis bullosa and deafness
1 gene
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1 of 1 corroborated by 2+ sources
CD151(5)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Epidermolysis bullosa Nephrotic syndrome-epidermolysis bullosa-sensorineural deafness syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CD151(5)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Epidermolysis bullosa Nephrotic syndrome, deafness, pretibial epidermolysis bullosa syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CD151(4)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Brachydactyly NOG-related symphalangism spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
NOG(6)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Epidermolysis bullosa occult macular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
RP1L1(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Cushing syndrome Oropharyngeal dysphagia
1 gene
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ATP2B3(1)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Atrial myxoma Cushing syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PRKAR1A(5)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
autosomal systemic lupus erythematosus type 16 Crest syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 25 →
BBS10-related ciliopathy Postaxial polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
BBS10(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Bilateral frontoparietal polymicrogyria Intracerebral hemorrhage
1 gene
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1 of 1 corroborated by 2+ sources
ADGRG1(5)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.