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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
myopathy with abnormal lipid metabolism Squamous cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
FLAD1(2)
0.001 1.000 5.12e-2 5.31e-2 Cluster 20 →
autosomal dominant combined immunodeficiency due to ERBIN deficiency Squamous cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
ERBIN(2)
0.001 1.000 5.12e-2 5.31e-2 —
Partial deletion of short arm of chromosome 3 Squamous cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
CHL1(2)
0.001 1.000 5.12e-2 5.31e-2 —
progressive essential tremor-speech impairment-facial dysmorphism-intellectual disability-abnormal behavior syndrome Squamous cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A17(2)
0.001 1.000 5.12e-2 5.31e-2 —
Congenital anosmia Hearing loss
1 gene
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TENM1(1)
0.003 0.500 4.96e-2 5.14e-2 —
Anosmia Hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
TENM1(2)
0.003 0.500 4.96e-2 5.14e-2 —
Glioma Rin2 syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RIN2(5)
0.001 1.000 4.92e-2 5.10e-2 —
Glioma Sarcosinemia
1 gene
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1 of 1 corroborated by 2+ sources
SARDH(7)
0.001 1.000 4.92e-2 5.10e-2 —
Glioma systemic lupus erythematosus 18
1 gene
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1 of 1 corroborated by 2+ sources
PLD4(2)
0.001 1.000 4.92e-2 5.10e-2 Cluster 284 →
Glioma thrombocytopenia 11 with multiple congenital anomalies and dysmorphic facies
1 gene
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1 of 1 corroborated by 2+ sources
RAP1B(2)
0.001 1.000 4.92e-2 5.10e-2 Cluster 284 →
Glioma neurodevelopmental disorder with or without seizures and gait abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
GRIA4(2)
0.001 1.000 4.92e-2 5.10e-2 —
Glioma lethal osteosclerotic bone dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
FAM20C(2)
0.001 1.000 4.92e-2 5.10e-2 —
Glioma leukodystrophy, hypomyelinating, 14
1 gene
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1 of 1 corroborated by 2+ sources
UFM1(2)
0.001 1.000 4.92e-2 5.10e-2 —
Glioma Microscopic polyangiitis
1 gene
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CDH19(1)
0.001 1.000 4.92e-2 5.10e-2 —
Giant cell tumor of bone Glioma
1 gene
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H3-3A(1)
0.001 1.000 4.92e-2 5.10e-2 —
Hypertrophic cardiomyopathy multiple acyl-CoA dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ETFDH(2)
0.004 0.333 4.91e-2 5.09e-2 —
Congenital stromal corneal dystrophy Endometriosis
1 gene
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1 of 1 corroborated by 2+ sources
SPARCL1(3)
0.003 0.500 4.82e-2 5.00e-2 —
Hypothyroidism Peroxisomal acyl-coa oxidase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TEN1(2)
0.003 0.500 4.80e-2 4.98e-2 ✓ sig. —
Diverticular disease multiple acyl-CoA dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ETFA(3)
0.004 0.333 4.77e-2 4.95e-2 ✓ sig. —
Diverticular disease Interferon gamma receptor deficiency
1 gene
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1 of 1 corroborated by 2+ sources
IFNGR2(2)
0.004 0.333 4.77e-2 4.95e-2 ✓ sig. —
Global developmental delay Periventricular leukomalacia
1 gene
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1 of 1 corroborated by 2+ sources
RPS6KC1(2)
0.003 0.500 4.75e-2 4.92e-2 ✓ sig. —
Global developmental delay Gm2 gangliosidosis
1 gene
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HEXA(1)
0.003 0.500 4.75e-2 4.92e-2 ✓ sig. —
Global developmental delay Turnpenny-fry syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PCGF2(5)
0.003 0.500 4.75e-2 4.92e-2 ✓ sig. —
Psoriasis Thiopurine s-methyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TPMT(4)
0.001 1.000 4.75e-2 4.92e-2 ✓ sig. —
Psoriasis Von zumbuzschs disease
1 gene
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1 of 1 corroborated by 2+ sources
IL36RN(5)
0.001 1.000 4.75e-2 4.92e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.