Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Nonsyndromic intellectual disability Progressive myoclonic epilepsy with renal failure
1 gene
Show details
1 of 1 corroborated by 2+ sources
SEMA6B(5)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
15q13.3 microdeletion syndrome Generalized epilepsy
1 gene
Show details
1 of 1 corroborated by 2+ sources
CHRNA7(5)
0.015 0.500 8.43e-3 9.76e-3 ✓ sig. —
Epilepsy due to perinatal stroke Peptic ulcer disease
1 gene
Show details
1 of 1 corroborated by 2+ sources
ST3GAL3(2)
0.008 1.000 7.86e-3 9.14e-3 ✓ sig. —
Mitochondrial complex deficiency neurodevelopmental disorder with microcephaly, impaired language, epilepsy, and gait abnormalities
1 gene
Show details
1 of 1 corroborated by 2+ sources
NARS1(2)
0.008 1.000 7.73e-3 9.02e-3 ✓ sig. —
complex neurodevelopmental disorder Intellectual developmental disorder seizures epilepsy
1 gene
Show details
1 of 1 corroborated by 2+ sources
AP2M1(3)
0.008 1.000 7.66e-3 8.95e-3 ✓ sig. —
complex neurodevelopmental disorder Epilepsy due to perinatal stroke
1 gene
Show details
1 of 1 corroborated by 2+ sources
ST3GAL3(2)
0.008 1.000 7.66e-3 8.95e-3 ✓ sig. —
1p36.33 duplication syndrome Cerebellar hypoplasia/atrophy, epilepsy, and global developmental delay
1 gene
Show details
1 of 1 corroborated by 2+ sources
ATAD3A(2)
0.026 0.333 7.00e-3 8.28e-3 ✓ sig. —
Bipolar depression X-linked epilepsy with or without intellectual disability and dysmorphic features
1 gene
Show details
1 of 1 corroborated by 2+ sources
GABRA3(4)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
Congenital disorder of glycosylation congenital muscular dystrophy with intellectual disability and severe epilepsy
1 gene
Show details
1 of 1 corroborated by 2+ sources
DPM2(4)
0.010 1.000 6.43e-3 7.68e-3 ✓ sig. —
Cardiac arrhythmia Progressive myoclonic epilepsy with intracellular inclusions
1 gene
Show details
1 of 1 corroborated by 2+ sources
PRDM8(3)
0.010 1.000 6.36e-3 7.63e-3 ✓ sig. —
Primary microcephaly-epilepsy-permanent neonatal diabetes syndrome Rolandic epilepsy
1 gene
Show details
1 of 1 corroborated by 2+ sources
IER3IP1(3)
0.020 0.500 6.10e-3 7.33e-3 ✓ sig. —
Lafora disease Rolandic epilepsy
1 gene
Show details
1 of 1 corroborated by 2+ sources
EPM2A(4)
0.020 0.500 6.10e-3 7.33e-3 ✓ sig. —
Microcephaly, epilepsy, and diabetes syndrome Rolandic epilepsy
1 gene
Show details
1 of 1 corroborated by 2+ sources
IER3IP1(5)
0.020 0.500 6.10e-3 7.33e-3 ✓ sig. —
Lymphatic system disease Rolandic epilepsy
1 gene
Show details
PTPRM(1)
0.020 0.500 6.10e-3 7.33e-3 ✓ sig. —
Intellectual developmental disorder, x-linked X-linked epilepsy with variable learning disabilities and behavior disorders
1 gene
Show details
1 of 1 corroborated by 2+ sources
SYN1(5)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Intellectual developmental disorder, x-linked X-linked epilepsy with learning disability and behavior disorder syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
SYN1(4)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Intellectual developmental disorder, x-linked X-linked epilepsy-learning disabilities-behavior disorders syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
SYN1(5)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Congenital cataract hearing loss developmental delay syndrome Partial epilepsy
1 gene
Show details
1 of 1 corroborated by 2+ sources
SLC33A1(3)
0.022 0.500 5.71e-3 6.93e-3 ✓ sig. —
Cortical dysplasia-focal epilepsy syndrome Idiopathic pulmonary fibrosis
1 gene
Show details
1 of 1 corroborated by 2+ sources
CNTNAP2(4)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
Atrial flutter Progressive myoclonic epilepsy with intracellular inclusions
1 gene
Show details
1 of 1 corroborated by 2+ sources
PRDM8(3)
0.012 1.000 5.26e-3 6.42e-3 ✓ sig. —
Epilepsy due to perinatal stroke Intellectual disability
1 gene
Show details
ST3GAL3(1)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Hyperekplexia epilepsy syndrome Hypogonadism
1 gene
Show details
1 of 1 corroborated by 2+ sources
ARHGEF9(3)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Female restricted epilepsy with intellectual disability X-linked intellectual disability
1 gene
Show details
PCDH19(1)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Hyperekplexia epilepsy syndrome X-linked intellectual disability
1 gene
Show details
1 of 1 corroborated by 2+ sources
ARHGEF9(3)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. Cluster 115 →
Complex regional pain syndrome Nocturnal frontal lobe epilepsy
1 gene
Show details
1 of 1 corroborated by 2+ sources
SPAG1(2)
0.059 0.125 4.67e-3 5.79e-3 ✓ sig. —

Showing 25 of 420 matching pairs, sorted by significance (descending). Click a column header to sort.