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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Branchiootorenal syndrome Hypercholanemia
1 gene
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1 of 1 corroborated by 2+ sources
TJP2(3)
0.091 0.250 1.82e-3 2.68e-3 ✓ sig. —
Klippel-feil syndrome Multiple synostoses syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GDF6(6)
0.091 0.250 1.82e-3 2.68e-3 ✓ sig. —
Adrenal gland neoplasms Corneal edema
1 gene
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TCF4(1)
0.091 0.250 1.82e-3 2.68e-3 ✓ sig. Cluster 222 →
Anaphylaxis Bile duct calculus
1 gene
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1 of 1 corroborated by 2+ sources
ASPG(2)
0.091 0.250 1.82e-3 2.68e-3 ✓ sig. —
Chiari-frommel syndrome Myoclonic dystonia
1 gene
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DRD2(1)
0.091 0.250 1.82e-3 2.68e-3 ✓ sig. Cluster 325 →
Anodontia Shwachman-diamond syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SBDS(7)
0.091 0.250 1.82e-3 2.68e-3 ✓ sig. Cluster 159 →
Carney complex Skeletal muscle disorder
1 gene
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1 of 1 corroborated by 2+ sources
SDHA(2)
0.091 0.250 1.82e-3 2.68e-3 ✓ sig. Cluster 81 →
hereditary pheochromocytoma-paraganglioma Skeletal muscle disorder
1 gene
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1 of 1 corroborated by 2+ sources
SDHA(2)
0.091 0.250 1.82e-3 2.68e-3 ✓ sig. Cluster 81 →
Arima syndrome Congenital cystic kidney disease
1 gene
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TMEM231(1)
0.091 0.250 1.82e-3 2.68e-3 ✓ sig. Cluster 8 →
Hepatic veno occlusive disease Variegate porphyria
1 gene
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HFE(1)
0.091 0.250 1.82e-3 2.68e-3 ✓ sig. Cluster 196 →
Anodontia Wolf-hirschhorn syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MSX1(2)
0.091 0.250 1.82e-3 2.68e-3 ✓ sig. Cluster 159 →
Micropenis Prostatic hyperplasia
1 gene
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1 of 1 corroborated by 2+ sources
SRD5A2(2)
0.091 0.250 1.82e-3 2.68e-3 ✓ sig. —
Prostatic hyperplasia Xanthinuria
1 gene
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1 of 1 corroborated by 2+ sources
SRD5A2(2)
0.091 0.250 1.82e-3 2.68e-3 ✓ sig. —
Bone marrow diseases Cerebellar diseases
1 gene
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1 of 1 corroborated by 2+ sources
TINF2(2)
0.091 0.250 1.82e-3 2.68e-3 ✓ sig. Cluster 130 →
Bundle branch block Cerebral atrophy
1 gene
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1 of 1 corroborated by 2+ sources
SETBP1(2)
0.091 0.250 1.82e-3 2.68e-3 ✓ sig. Cluster 271 →
Blepharitis Rosacea
1 gene
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MC1R(1)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. Cluster 1 →
Blepharitis Sebaceous gland disease
1 gene
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MC1R(1)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —
Arrhythmogenic right ventricular dysplasia Brain compression
1 gene
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1 of 1 corroborated by 2+ sources
CTNNA3(2)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —
Buruli ulcer Lymphoproliferative syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC11A1(3)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —
Carnitine acetyltransferase deficiency Neurodegeneration with brain iron accumulation
1 gene
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1 of 1 corroborated by 2+ sources
CRAT(4)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. Cluster 92 →
Anaplasia Cholangitis
1 gene
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1 of 1 corroborated by 2+ sources
HIF1A(2)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —
Anterior segment mesenchymal dysgenesis Chromosome 1q21.1 deletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GJA8(4)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —
Cholangitis Chylomicron retention disease
1 gene
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DCDC2(1)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —
Coats plus syndrome Metabolic bone disorder
1 gene
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1 of 1 corroborated by 2+ sources
CTC1(3)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —
Autoinflammatory disease, familial, behcet-like 3 Endocrine system disease
1 gene
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1 of 1 corroborated by 2+ sources
RELA(3)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.