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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Female restricted epilepsy with intellectual disability Strabismus
1 gene
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1 of 1 corroborated by 2+ sources
PCDH19(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
focal segmental glomerulosclerosis 3, susceptibility to Genetic steroid-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CD2AP(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
focal segmental glomerulosclerosis 3, susceptibility to Hereditary steroid-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CD2AP(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
FOXG1 disorder Strabismus
1 gene
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1 of 1 corroborated by 2+ sources
FOXG1(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
frontotemporal dementia and/or amyotrophic lateral sclerosis 1 Schizoaffective disorder
1 gene
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1 of 1 corroborated by 2+ sources
C9orf72(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Groenouw corneal dystrophy Sepsis
1 gene
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1 of 1 corroborated by 2+ sources
TGFBI(3)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Congenital cranial dysinnervation disorder Schizoaffective disorder
1 gene
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1 of 1 corroborated by 2+ sources
NEUROG1(3)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. Cluster 265 →
Developmental delay with facial dysmorphism syndrome Strabismus
1 gene
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1 of 1 corroborated by 2+ sources
MED13L(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Dna2-related mitochondrial dna deletion syndrome Growth hormone deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DNA2(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Dna2-related mitochondrial dna deletion syndrome Pituitary short stature
1 gene
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1 of 1 corroborated by 2+ sources
DNA2(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Dock2 deficiency Triple negative breast cancer
1 gene
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1 of 1 corroborated by 2+ sources
DOCK2(4)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Congenital nephrotic syndrome Genetic steroid-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NPHS1(4)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. Cluster 30 →
Congenital nephrotic syndrome Hereditary steroid-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NPHS1(3)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. Cluster 30 →
Cryptogenic multifocal ulcerous stenosing enteritis Schizoaffective disorder
1 gene
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1 of 1 corroborated by 2+ sources
PLA2G4A(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. Cluster 265 →
Cytosolic phospholipase-a2 alpha deficiency associated bleeding disorder Schizoaffective disorder
1 gene
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1 of 1 corroborated by 2+ sources
PLA2G4A(5)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. Cluster 265 →
Deaf blind hypopigmentation syndrome Growth hormone deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SOX10(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Lymphocytic b-cell leukemia TFRC-related combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
TFRC(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Strabismus Troyer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPART(4)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Growth hormone deficiency Waardenburg syndrome type 4C
1 gene
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1 of 1 corroborated by 2+ sources
SOX10(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Genetic steroid-resistant nephrotic syndrome Woolly hair-palmoplantar keratoderma syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KANK2(3)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. Cluster 30 →
Hereditary steroid-resistant nephrotic syndrome Woolly hair-palmoplantar keratoderma syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KANK2(3)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. Cluster 30 →
Growth hormone deficiency X-linked agammaglobulinemia
1 gene
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1 of 1 corroborated by 2+ sources
BTK(3)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Pituitary short stature X-linked agammaglobulinemia
1 gene
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1 of 1 corroborated by 2+ sources
BTK(3)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Growth hormone deficiency X-linked hypogammaglobulinemia
1 gene
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BTK(1)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Pituitary short stature X-linked hypogammaglobulinemia
1 gene
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BTK(1)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.