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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Bile duct cancer Trigeminal neuralgia
1 gene
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1 of 1 corroborated by 2+ sources
MAPK1(3)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Bone remodeling disease Synpolydactyly
1 gene
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1 of 1 corroborated by 2+ sources
CHST11(2)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Bone remodeling disease Hennekam syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CCBE1(6)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Corticobasal syndrome Frontotemporal dementia with or without amyotrophic lateral sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
TBK1(6)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Cystic fibrosis-related diabetes Intestinal obstruction
1 gene
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1 of 1 corroborated by 2+ sources
SLC26A9(3)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. Cluster 172 →
Dent disease Hypophosphatemic rickets
1 gene
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1 of 1 corroborated by 2+ sources
CLCN5(7)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Combined deficiency of vitamin k-dependent clotting factors familial thoracic aortic aneurysm and aortic dissection
1 gene
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1 of 1 corroborated by 2+ sources
MAT2A(2)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Bilirubin metabolism disease Rotor syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLCO1B1(4)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. Cluster 260 →
Smith-magenis syndrome Specific learning disability
1 gene
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1 of 1 corroborated by 2+ sources
IQSEC2(2)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Developmental coordination disorder Hypotonia-cystinuria syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CAMKMT(2)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Thyrotoxic periodic paralysis Urethral disease
1 gene
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ZFHX3(1)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Congenital pes cavus Pericardium disorder
1 gene
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1 of 1 corroborated by 2+ sources
PTPRQ(2)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Hypotrichosis simplex Perniola krajewska carnevale syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LSS(3)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Frontotemporal dementia with or without amyotrophic lateral sclerosis Genetic neurodegenerative disease
1 gene
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KIF5A(1)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Cholecystitis Sitosterolemia
1 gene
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1 of 1 corroborated by 2+ sources
ABCG8(7)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Chromosome 22q11.2 microdeletion syndrome Specific learning disability
1 gene
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1 of 1 corroborated by 2+ sources
MAPK1(2)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Coenzyme q10 deficiency Shy-drager syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COQ2(4)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Central nervous system malformation Lipodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
LMNB2(4)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. Cluster 71 →
Chromosome 2q32-q33 deletion syndrome Clinodactyly
1 gene
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1 of 1 corroborated by 2+ sources
SATB2(3)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. —
Perisylvian polymicrogyria Seckel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CPAP(6)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. —
Carcinogenesis Primary adrenal insufficiency
1 gene
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1 of 1 corroborated by 2+ sources
CUX1(2)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. —
Congenital cataract facial dysmorphism neuropathy syndrome Nuclear cataract
1 gene
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1 of 1 corroborated by 2+ sources
GJA3(3)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. Cluster 43 →
Cardiac, facial, and digital anomalies with developmental delay syndromic complex neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
TRAF7(5)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. —
Congenital nervous system disorder Developmental regression
1 gene
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1 of 1 corroborated by 2+ sources
UNC13A(3)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. —
Congenital radioulnar synostosis Thoracic aortic aneurysm
1 gene
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1 of 1 corroborated by 2+ sources
SMAD6(2)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.