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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Autoinflammatory syndrome Autoinflammatory syndrome, familial, behcet-like
1 gene
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1 of 1 corroborated by 2+ sources
TNFAIP3(5)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
autosomal dominant slowed nerve conduction velocity Spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Farber disease Spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
ASAH1(5)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
frontotemporal dementia and/or amyotrophic lateral sclerosis 2 Spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
CHCHD10(4)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Gestational trophoblastic disease Toxic epidermal necrolysis
1 gene
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1 of 1 corroborated by 2+ sources
POU5F1(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Glycogen storage disease glycogen storage disease due to glycogen branching enzyme deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GBE1(7)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Glycogen storage disease glycogen storage disease due to muscle and heart glycogen synthase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GYS1(7)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. Cluster 148 →
Glycogen storage disease glycogen storage disease I
1 gene
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1 of 1 corroborated by 2+ sources
G6PC1(8)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Glycogen storage disease glycogen storage disease II
1 gene
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1 of 1 corroborated by 2+ sources
GAA(7)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Glycogen storage disease glycogen storage disease III
1 gene
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1 of 1 corroborated by 2+ sources
AGL(7)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. Cluster 148 →
Glycogen storage disease glycogen storage disease IXb
1 gene
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1 of 1 corroborated by 2+ sources
PHKB(7)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Glycogen storage disease glycogen storage disease IXc
1 gene
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1 of 1 corroborated by 2+ sources
PHKG2(8)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Glycogen storage disease glycogen storage disease IXd
1 gene
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1 of 1 corroborated by 2+ sources
PHKA1(6)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Glycogen storage disease glycogen storage disease V
1 gene
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1 of 1 corroborated by 2+ sources
PYGM(7)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. Cluster 148 →
Glycogen storage disease glycogen storage disease VI
1 gene
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1 of 1 corroborated by 2+ sources
PYGL(7)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. Cluster 148 →
Glycogen storage disease glycogen storage disorder due to hepatic glycogen synthase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GYS2(6)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Glycogen storage disease Glycoprotein storage disease
1 gene
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1 of 1 corroborated by 2+ sources
GAA(7)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Adenosine deaminase 2 deficiency Diamond-blackfan anemia
1 gene
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1 of 1 corroborated by 2+ sources
ADA2(4)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Adenosine deaminase 2 deficiency Autoinflammatory syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ADA2(4)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Adult polyglucosan body disease Glycogen storage disease
1 gene
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1 of 1 corroborated by 2+ sources
GBE1(7)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Adult-onset proximal spinal muscular atrophy Spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
VAPB(4)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
AFG3L2-related optic atrophy and/or spastic ataxia spectrum Glycogen storage disease
1 gene
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1 of 1 corroborated by 2+ sources
AFG3L2(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Albinism Duodenal ulcer
1 gene
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1 of 1 corroborated by 2+ sources
TPCN2(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
amyotrophic lateral sclerosis type 8 Spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
VAPB(4)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Aplasia of lacrimal and salivary glands Cleft lip
1 gene
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1 of 1 corroborated by 2+ sources
FGF10(5)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.