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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Autoinflammatory syndrome mucopolysaccharidosis type 3A
1 gene
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1 of 1 corroborated by 2+ sources
SGSH(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Atypical femoral fracture mucopolysaccharidosis type 4A
1 gene
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1 of 1 corroborated by 2+ sources
GALNS(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
cone-rod dystrophy 2 Retinal degeneration
1 gene
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1 of 1 corroborated by 2+ sources
CRX(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. Cluster 7 →
Congenital merosin-deficient muscular dystrophy Toxic epidermal necrolysis
1 gene
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1 of 1 corroborated by 2+ sources
LAMA2(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Congenital-onset steinert myotonic dystrophy Noonan syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DMPK(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Cryptogenic multifocal ulcerous stenosing enteritis Duodenal ulcer
1 gene
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1 of 1 corroborated by 2+ sources
PLA2G4A(3)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Autoinflammatory syndrome Cyclic hematopoiesis
1 gene
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1 of 1 corroborated by 2+ sources
ELANE(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Cytosolic phospholipase-a2 alpha deficiency associated bleeding disorder Duodenal ulcer
1 gene
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1 of 1 corroborated by 2+ sources
PLA2G4A(5)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Danon disease Glycogen storage disease
1 gene
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1 of 1 corroborated by 2+ sources
LAMP2(6)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. Cluster 148 →
Cleft lip Deafness with labyrinthine aplasia, microtia, and microdontia
1 gene
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1 of 1 corroborated by 2+ sources
FGF3(7)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Degcags syndrome Diamond-blackfan anemia
1 gene
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1 of 1 corroborated by 2+ sources
ZNF699(3)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. Cluster 236 →
nephrotic syndrome 14 Seborrheic dermatitis
1 gene
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1 of 1 corroborated by 2+ sources
SGPL1(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. Cluster 162 →
nephrotic syndrome, type 3 Retinal degeneration
1 gene
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1 of 1 corroborated by 2+ sources
PLCE1(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
netherton syndrome Seborrheic dermatitis
1 gene
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1 of 1 corroborated by 2+ sources
SPINK5(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. Cluster 162 →
neuronopathy, distal hereditary motor, autosomal recessive 5 Spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
DNAJB2(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. Cluster 15 →
NMNAT1-related retinopathy Retinal degeneration
1 gene
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1 of 1 corroborated by 2+ sources
NMNAT1(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Cleft lip Otodental dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
FGF3(3)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Dicarboxylic aminoaciduria Retinal degeneration
1 gene
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1 of 1 corroborated by 2+ sources
SLC1A1(7)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
dilated cardiomyopathy 1D Glycogen storage disease
1 gene
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1 of 1 corroborated by 2+ sources
TNNT2(3)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Dimauro disease Glycogen storage disease
1 gene
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1 of 1 corroborated by 2+ sources
PGAM2(6)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. Cluster 148 →
Autoinflammatory syndrome Ditra syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IL36RN(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Early-onset spastic ataxia-myoclonic epilepsy-neuropathy syndrome Glycogen storage disease
1 gene
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1 of 1 corroborated by 2+ sources
AFG3L2(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
ASAH1-related sphingolipidosis Spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
ASAH1(6)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Ataxia-pancytopenia syndrome Autoinflammatory syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SAMD9L(5)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Autoinflammatory syndrome Autoinflammatory syndrome with cytopenia, hyperzincemia, and hypercalprotectinemia
1 gene
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1 of 1 corroborated by 2+ sources
PSTPIP1(3)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.