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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
coffin-lowry syndrome Ventricular septal defect
1 gene
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1 of 1 corroborated by 2+ sources
RPS6KA3(2)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Congenital absence of breast with absent nipple Hyperinsulinism
1 gene
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PTPRF(1)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Congenital alveolar capillary dysplasia Ventricular septal defect
1 gene
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1 of 1 corroborated by 2+ sources
FOXF1(2)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Brain disease Congenital brain dysgenesis due to glutamine synthetase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GLUL(6)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Neurodegenerative disorder Pantothenate kinase-associated neurodegeneration
1 gene
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1 of 1 corroborated by 2+ sources
PANK2(4)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
Periodic paralysis with transient compartment-like syndrome Tooth agenesis
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1S(3)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
Heart valve disease Pyoderma gangrenosum
1 gene
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1 of 1 corroborated by 2+ sources
PTPN6(3)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
Neurodegenerative disorder Regressive neurodevelopmental disorder dystonia seizures
1 gene
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1 of 1 corroborated by 2+ sources
IRF2BPL(3)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
Tooth agenesis tooth agenesis, selective, 3
1 gene
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1 of 1 corroborated by 2+ sources
PAX9(6)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. Cluster 63 →
Tooth agenesis tooth agenesis, selective, 9
1 gene
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1 of 1 corroborated by 2+ sources
GREM2(5)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. Cluster 63 →
Heart valve disease Vitamin k deficiency
1 gene
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1 of 1 corroborated by 2+ sources
BGLAP(2)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. Cluster 370 →
amyotrophic lateral sclerosis type 10 Neurodegenerative disorder
1 gene
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1 of 1 corroborated by 2+ sources
TARDBP(3)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
Anhidrotic ectodermal dysplasia Tooth agenesis
1 gene
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1 of 1 corroborated by 2+ sources
EDA(6)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
aortic valve disease 3 Thoracic aortic aneurysm and aortic dissection
1 gene
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1 of 1 corroborated by 2+ sources
ROBO4(2)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
Bullous pyoderma gangrenosum Heart valve disease
1 gene
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1 of 1 corroborated by 2+ sources
PTPN6(3)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
neurodegenerative disease Neurodegenerative disorder
1 gene
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1 of 1 corroborated by 2+ sources
IRF2BPL(2)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
oligodontia-cancer predisposition syndrome Tooth agenesis
1 gene
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1 of 1 corroborated by 2+ sources
AXIN2(3)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. Cluster 63 →
Heart valve disease lissencephaly 10
1 gene
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1 of 1 corroborated by 2+ sources
CEP85L(2)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
Schopf-schulz-passarge syndrome Tooth agenesis
1 gene
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1 of 1 corroborated by 2+ sources
WNT10A(7)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
Neurodegenerative disorder Striatal neurodegeneration
1 gene
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1 of 1 corroborated by 2+ sources
PDE8B(5)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
T-cell immunodeficiency Tooth agenesis
1 gene
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1 of 1 corroborated by 2+ sources
FOXI3(2)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
ectodermal dysplasia WNT10A related Tooth agenesis
1 gene
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1 of 1 corroborated by 2+ sources
WNT10A(8)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
Arteriosclerosis Corneal injury
1 gene
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1 of 1 corroborated by 2+ sources
ALDH3A1(2)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. Cluster 141 →
craniofacial dysplasia - osteopenia syndrome Tooth agenesis
1 gene
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1 of 1 corroborated by 2+ sources
IRX5(4)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
craniosynostosis 2 Tooth agenesis
1 gene
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1 of 1 corroborated by 2+ sources
MSX2(2)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.