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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Combined immunodeficiency disease combined immunodeficiency due to STIM1 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
STIM1(4)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Combined immunodeficiency disease combined immunodeficiency due to STK4 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
STK4(5)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 10 →
Combined immunodeficiency disease combined immunodeficiency due to ZAP70 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ZAP70(5)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
complex movement disorder with or without neurodevelopmental features Dystonia
1 gene
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1 of 1 corroborated by 2+ sources
HPCA(4)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 167 →
cone dystrophy 3 Macular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
GUCA1A(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
cone dystrophy 3 Usher syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GUCA1A(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
cone-rod dystrophy 2 Macular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CRX(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 7 →
cone-rod dystrophy 2 Usher syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CRX(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Congenital adrenal hyperplasia due to 21-hydroxylase deficiency Ehlers-danlos syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CYP21A2(4)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Congenital microtia Dystonia
1 gene
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1 of 1 corroborated by 2+ sources
PRKRA(6)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
exostoses, multiple, type 1 Partial epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
EXT1(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Fanconi anemia complementation group A Salivary gland neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
FANCA(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Dystonia Focal dystonia
1 gene
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1 of 1 corroborated by 2+ sources
GNAL(6)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 167 →
Combined immunodeficiency disease lymphoproliferative syndrome 1
1 gene
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1 of 1 corroborated by 2+ sources
ITK(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Combined immunodeficiency disease lymphoproliferative syndrome 2
1 gene
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1 of 1 corroborated by 2+ sources
CD27(3)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
macular corneal dystrophy Macular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CHST6(4)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 7 →
megalencephalic leukoencephalopathy with subcortical cysts 1 Salivary gland neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
MLC1(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability Usher syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KIF11(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Cranio-cervical dystonia Dystonia
1 gene
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1 of 1 corroborated by 2+ sources
ANO3(6)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Deafness dystonia syndrome Dystonia
1 gene
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1 of 1 corroborated by 2+ sources
TIMM8A(3)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Combined immunodeficiency disease immunodeficiency 15a
1 gene
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1 of 1 corroborated by 2+ sources
IKBKB(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Combined immunodeficiency disease immunodeficiency 53
1 gene
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1 of 1 corroborated by 2+ sources
RELB(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 10 →
Combined immunodeficiency disease immunodeficiency 76
1 gene
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1 of 1 corroborated by 2+ sources
FCHO1(3)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Combined immunodeficiency disease immunodeficiency 92
1 gene
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1 of 1 corroborated by 2+ sources
REL(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
IMPG1-related dominant retinopathy Macular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
IMPG1(4)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.