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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Usher syndrome Usher syndrome type 3
1 gene
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1 of 1 corroborated by 2+ sources
CLRN1(7)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Dystonia VPS11-related neurological disorder
1 gene
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1 of 1 corroborated by 2+ sources
VPS11(4)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Usher syndrome X-linked dominant chondrodysplasia chassaing-lacombe type
1 gene
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1 of 1 corroborated by 2+ sources
HDAC6(4)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Dystonia X-linked dystonia-parkinsonism
1 gene
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1 of 1 corroborated by 2+ sources
TAF1(6)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 167 →
Macular dystrophy X-linked retinitis pigmentosa
1 gene
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RP2(1)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Salivary gland neoplasms Zhu-tokita-takenouchi-kim syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SON(6)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Atrial myxoma Usher syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PRKAR1A(4)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
autosomal dominant combined immunodeficiency due to ERBIN deficiency Combined immunodeficiency disease
1 gene
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1 of 1 corroborated by 2+ sources
ERBIN(4)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 10 →
Axonal neuropathy Partial epilepsy
1 gene
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GBF1(1)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
B3GALT6-congenital disorder of glycosylation Ehlers-danlos syndrome
1 gene
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1 of 1 corroborated by 2+ sources
B3GALT6(5)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
BBS1-related ciliopathy Usher syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BBS1(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Benign concentric annular macular dystrophy Macular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
IMPG1(5)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
CERKL-related retinopathy Macular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CERKL(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 7 →
Cervical dystonia Dystonia
1 gene
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1 of 1 corroborated by 2+ sources
CIZ1(3)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 167 →
Cirrhosis-dystonia-polycythemia-hypermanganesemia syndrome Dystonia
1 gene
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1 of 1 corroborated by 2+ sources
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
CNGA1-related retinopathy Macular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CNGA1(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 7 →
CNGA3-related retinopathy Macular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CNGA3(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
CNGB3-related retinopathy Macular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CNGB3(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Combined immunodeficiency disease combined immunodeficiency due to CD3gamma deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CD3G(5)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 10 →
Combined immunodeficiency disease combined immunodeficiency due to DOCK8 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DOCK8(5)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Combined immunodeficiency disease combined immunodeficiency due to GINS1 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GINS1(5)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 10 →
Combined immunodeficiency disease combined immunodeficiency due to LRBA deficiency
1 gene
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1 of 1 corroborated by 2+ sources
LRBA(3)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 10 →
Combined immunodeficiency disease combined immunodeficiency due to MALT1 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MALT1(4)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Combined immunodeficiency disease combined immunodeficiency due to moesin deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MSN(5)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 10 →
Combined immunodeficiency disease combined immunodeficiency due to OX40 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TNFRSF4(5)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 10 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.