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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cone rod dystrophy and hearing loss Retinal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CEP250(6)
0.053 0.500 2.19e-3 2.92e-3 ✓ sig. —
Bothnia retinal dystrophy Night blindness, congenital stationary
1 gene
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1 of 1 corroborated by 2+ sources
RLBP1(7)
0.036 1.000 1.74e-3 2.42e-3 ✓ sig. —
Amyloidosis Retinal dystrophy with inner retinal dysfunction and ganglion cell abnormalities
1 gene
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ITM2B(1)
0.038 1.000 1.61e-3 2.26e-3 ✓ sig. —
Autosomal recessive mental retardation Cerebellar dysplasia with cysts with or without retinal dystrophy
1 gene
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LAMA1(1)
0.048 1.000 1.29e-3 1.89e-3 ✓ sig. —
Inherited retinal dystrophy Mucopolysaccharidosis type 3C
1 gene
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1 of 1 corroborated by 2+ sources
HGSNAT(2)
0.053 1.000 1.16e-3 1.73e-3 ✓ sig. —
Goldmann-favre syndrome Inherited retinal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
NR2E3(4)
0.053 1.000 1.16e-3 1.73e-3 ✓ sig. —
Generalized resistance to thyroid hormone Inherited retinal dystrophy
1 gene
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THRB(1)
0.053 1.000 1.16e-3 1.73e-3 ✓ sig. —
Enhanced s-cone syndrome Inherited retinal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
NR2E3(2)
0.053 1.000 1.16e-3 1.73e-3 ✓ sig. —
Inherited retinal dystrophy Mucopolysaccharidosis type iiic (sanfilippo c)
1 gene
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1 of 1 corroborated by 2+ sources
HGSNAT(2)
0.053 1.000 1.16e-3 1.73e-3 ✓ sig. —
Inherited retinal dystrophy Sulfatidosis, juvenile, austin type
1 gene
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0.053 1.000 1.16e-3 1.73e-3 ✓ sig. —
Inherited retinal dystrophy Refetoff syndrome
1 gene
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THRB(1)
0.053 1.000 1.16e-3 1.73e-3 ✓ sig. —
Inherited retinal dystrophy Snowflake vitreoretinal degeneration
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ13(2)
0.053 1.000 1.16e-3 1.73e-3 ✓ sig. —
Inherited retinal dystrophy Pituitary resistance to thyroid hormone
1 gene
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THRB(1)
0.053 1.000 1.16e-3 1.73e-3 ✓ sig. —
Inherited retinal dystrophy Retinitis pigmentosa-12, autosomal recessive
1 gene
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1 of 1 corroborated by 2+ sources
CRB1(2)
0.053 1.000 1.16e-3 1.73e-3 ✓ sig. —
Muscle cramps Retinal dystrophy
1 gene
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POC5(1)
0.056 1.000 1.10e-3 1.65e-3 ✓ sig. —
Retinal dystrophy Retinitis pigmentosa with choroidal involvement
1 gene
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1 of 1 corroborated by 2+ sources
RPE65(5)
0.056 1.000 1.10e-3 1.65e-3 ✓ sig. —
Maternally-inherited diabetes and deafness Retinal dystrophy
1 gene
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TRNL1(1)
0.056 1.000 1.10e-3 1.65e-3 ✓ sig. —
Abnormal muscle physiology Retinal dystrophy
1 gene
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POC5(1)
0.056 1.000 1.10e-3 1.65e-3 ✓ sig. —
Retinal dystrophy Senior-l??ken syndrome
1 gene
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SCLT1(1)
0.056 1.000 1.10e-3 1.65e-3 ✓ sig. —
Axonal neuropathy and neurodevelopmental disorder (digfan syndrome) Retinal dystrophy
1 gene
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MORC2(1)
0.056 1.000 1.10e-3 1.65e-3 ✓ sig. —
Fetal anomalies Retinal dystrophy
1 gene
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SCLT1(1)
0.056 1.000 1.10e-3 1.65e-3 ✓ sig. —
Nephronophthisis 12 Retinal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
TTC21B(2)
0.056 1.000 1.10e-3 1.65e-3 ✓ sig. —
Mucopolysaccharidosis type 3A Retinal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SGSH(2)
0.056 1.000 1.10e-3 1.65e-3 ✓ sig. —
Mucopolysaccharidosis type iiia (sanfilippo a) Retinal dystrophy
1 gene
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SGSH(1)
0.056 1.000 1.10e-3 1.65e-3 ✓ sig. —
Charcot-Marie-Tooth disease axonal type 2Z Retinal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
MORC2(2)
0.056 1.000 1.10e-3 1.65e-3 ✓ sig. —

Showing 25 of 143 matching pairs, sorted by significance (descending). Click a column header to sort.