Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Otosclerosis Retrognathia
1 gene
Show details
1 of 1 corroborated by 2+ sources
PRRX1(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Otosclerosis Rothmund-Thomson syndrome type 1
1 gene
Show details
1 of 1 corroborated by 2+ sources
ANAPC1(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Muscular dystrophy Sarcotubular myopathy
1 gene
Show details
1 of 1 corroborated by 2+ sources
TRIM32(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Severe combined immunodeficiency severe combined immunodeficiency due to CARMIL2 deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
CARMIL2(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 10 →
Severe combined immunodeficiency severe combined immunodeficiency due to CD70 deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
CD70(3)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Severe combined immunodeficiency severe combined immunodeficiency due to CORO1A deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
CORO1A(5)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Severe combined immunodeficiency severe combined immunodeficiency due to CTPS1 deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
CTPS1(4)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 10 →
Severe combined immunodeficiency severe combined immunodeficiency due to DCLRE1C deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
DCLRE1C(7)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Severe combined immunodeficiency severe combined immunodeficiency due to DNA-PKcs deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
PRKDC(5)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Severe combined immunodeficiency severe combined immunodeficiency due to IKK2 deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
IKBKB(4)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Severe combined immunodeficiency severe combined immunodeficiency due to LAT deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
LAT(4)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Severe combined immunodeficiency severe combined immunodeficiency due to LCK deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
LCK(4)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 10 →
Severe combined immunodeficiency severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-negative, due to adenosine deaminase deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
ADA(7)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Severe combined immunodeficiency T-B+ severe combined immunodeficiency due to JAK3 deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
JAK3(4)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 10 →
Severe combined immunodeficiency t-cell immunodeficiency, congenital alopecia, and nail dystrophy
1 gene
Show details
1 of 1 corroborated by 2+ sources
FOXN1(3)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 10 →
Advanced sleep phase syndrome Substance abuse
2 genes
Show details
2 of 2 corroborated by 2+ sources
PER2(4), PER3(3)
0.004 0.667 3.29e-3 4.30e-3 ✓ sig. —
Septo-optic dysplasia Upper extremity fracture
1 gene
Show details
1 of 1 corroborated by 2+ sources
ARID1A(2)
0.067 0.200 3.24e-3 4.24e-3 ✓ sig. —
Acrodysostosis Gallbladder neoplasms
1 gene
Show details
1 of 1 corroborated by 2+ sources
PDE4D(3)
0.037 0.500 3.24e-3 4.24e-3 ✓ sig. —
Polymicrogyria Skraban-deardorff syndrome
1 gene
Show details
WDR62(1)
0.037 0.500 3.24e-3 4.24e-3 ✓ sig. —
Conjunctival disease Gallbladder neoplasms
1 gene
Show details
1 of 1 corroborated by 2+ sources
DAPK1(3)
0.037 0.500 3.24e-3 4.24e-3 ✓ sig. Cluster 143 →
Cone-rod synaptic disorder Night blindness, congenital stationary
1 gene
Show details
1 of 1 corroborated by 2+ sources
CABP4(4)
0.037 0.500 3.24e-3 4.24e-3 ✓ sig. —
acute myeloid leukemia Promyelocytic leukemia
1 gene
Show details
1 of 1 corroborated by 2+ sources
CEBPA(2)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
Agnathia-otocephaly Cardiac embolism
1 gene
Show details
PRRX1(1)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
Hereditary hearing loss Usher syndrome type 2D
1 gene
Show details
1 of 1 corroborated by 2+ sources
WHRN(2)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
Neurodevelopmental disorder with dilated cardiomyopathy Small vessel stroke
1 gene
Show details
1 of 1 corroborated by 2+ sources
CAMK2D(2)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.