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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Bradycardia Water intoxication
1 gene
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1 of 1 corroborated by 2+ sources
UTS2(2)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Arthritis Giant axonal neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
GAN(7)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Gm2 gangliosidosis Leukodystrophy
1 gene
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HEXA(1)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Arthritis Autoimmune interstitial lung disease-arthritis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COPA(5)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Camos syndrome Dyskinesia
1 gene
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1 of 1 corroborated by 2+ sources
WDR73(3)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Ankle fracture Creutzfeldt-jakob disease
1 gene
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1 of 1 corroborated by 2+ sources
CPED1(3)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Craniofacial dysplasia short stature ectodermal anomalies intellectual disability syndrome Hydrocephalus
1 gene
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1 of 1 corroborated by 2+ sources
DPH1(3)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Amino acid metabolism disorder Creatine deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GAMT(2)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Creutzfeldt-jakob disease Dementia in huntington’s disease
1 gene
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1 of 1 corroborated by 2+ sources
PRNP(4)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Autoimmune pancreatitis Creutzfeldt-jakob disease
1 gene
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1 of 1 corroborated by 2+ sources
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Dyskeratosis congenita Primary cutaneous anaplastic large cell lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
NPM1(4)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Developmental delay with short stature and dysmorphic facial features Hydrocephalus
1 gene
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1 of 1 corroborated by 2+ sources
DPH1(7)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Duplication 15q11-q13 syndrome Dyskinesia
1 gene
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1 of 1 corroborated by 2+ sources
AUTS2(2)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Coats plus syndrome Dyskeratosis congenita
1 gene
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1 of 1 corroborated by 2+ sources
CTC1(4)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Amino acid metabolism disorder Hyperprolinemia
1 gene
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1 of 1 corroborated by 2+ sources
PRODH(6)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. Cluster 83 →
Hypo-akinesia disorder of prenatal onset Pena-shokeir syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHRNG(3)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Hypokalemia-hypomagnesemia Vascular disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC12A3(3)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Bladder dysfunction Vascular disease
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA3(3)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Breast/nipple aplasia or hypoplasia Conduct disorder
1 gene
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1 of 1 corroborated by 2+ sources
PTPRF(5)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Retinopathy thrombocytopenia 6
1 gene
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1 of 1 corroborated by 2+ sources
SRC(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Urinary bladder dysfunction Vascular disease
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA3(3)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Retinopathy X-linked retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
RP2(3)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Conduct disorder Congenital absence of breast with absent nipple
1 gene
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1 of 1 corroborated by 2+ sources
PTPRF(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Congenital hyperammonemia Vascular disease
1 gene
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1 of 1 corroborated by 2+ sources
CPS1(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Conduct disorder Congenital hypogonadotropic hypogonadism
1 gene
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1 of 1 corroborated by 2+ sources
EMX2(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.