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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cognition disorder Cognitive impairment-coarse facies-heart defects-obesity-pulmonary involvement-short stature-skeletal dysplasia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AFF4(4)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Aplasia of the vermis Congenital cerebral hernia
1 gene
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PIBF1(1)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. Cluster 8 →
Autoimmunity-autoinflammation-immunodeficiency syndrome Psoriasis vulgaris
1 gene
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1 of 1 corroborated by 2+ sources
SOCS1(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Autoinflammatory syndrome with immunodeficiency Psoriasis vulgaris
1 gene
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1 of 1 corroborated by 2+ sources
SOCS1(3)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Autoinflammatory syndrome, familial, behcet-like Psoriasis vulgaris
1 gene
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1 of 1 corroborated by 2+ sources
TNFAIP3(5)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Autoinflammatory syndrome, familial, with or without immunodeficiency Psoriasis vulgaris
1 gene
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1 of 1 corroborated by 2+ sources
SOCS1(3)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Autoinflammatory syndrome, familial, behcet-like Lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
TNFAIP3(4)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Myeloproliferative disorder Thrombasthenia-thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
GFI1B(3)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Thyroid disease Ulnar-mammary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX3(6)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Lymphoma Upper extremity deformity, congenital
1 gene
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1 of 1 corroborated by 2+ sources
EZH2(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Peripheral nervous system disease xeroderma pigmentosum group B
1 gene
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1 of 1 corroborated by 2+ sources
ERCC3(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Congenital anomalies of the kidney and urinary tract Yuksel-vogel-bauer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DLG5(3)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Congenital anomalies of the kidney and urinary tract Middle lobe syndrome
1 gene
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SALL1(1)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Lymphoma Mucosa-associated lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
BCL10(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Alexander disease Peripheral nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
GFAP(4)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Congenital anomalies of the kidney and urinary tract nephronophthisis 1
1 gene
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1 of 1 corroborated by 2+ sources
NPHP1(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Congenital anomalies of the kidney and urinary tract nephronophthisis 4
1 gene
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1 of 1 corroborated by 2+ sources
NPHP4(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Gastric ulcer neuroblastoma, susceptibility to, 3
1 gene
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1 of 1 corroborated by 2+ sources
ALK(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Lymphoma neutrophil immunodeficiency syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RAC2(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Myeloproliferative disorder platelet-type bleeding disorder 17
1 gene
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1 of 1 corroborated by 2+ sources
GFI1B(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Primary angle-closure glaucoma Thyroid disease
1 gene
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1 of 1 corroborated by 2+ sources
SPATA13(4)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. Cluster 39 →
Congenital anomalies of the kidney and urinary tract congenital anomaly of kidney and urinary tract
1 gene
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1 of 1 corroborated by 2+ sources
CHD1L(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
congenital disorder of glycosylation type II Lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
ATP6AP1(2)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. Cluster 1 →
Dimethylglycine dehydrogenase deficiency Gastric ulcer
1 gene
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1 of 1 corroborated by 2+ sources
DMGDH(7)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —
Distal myotilinopathy Peripheral nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
MYOT(3)
0.019 1.000 3.44e-3 4.45e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.