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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Male infertility acephalic spermatozoa Teratozoospermia
1 gene
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1 of 1 corroborated by 2+ sources
PMFBP1(2)
0.034 0.500 3.50e-3 4.52e-3 ✓ sig. —
Malonic aciduria Methylmalonic acidemia
1 gene
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1 of 1 corroborated by 2+ sources
ACSF3(2)
0.034 0.500 3.50e-3 4.52e-3 ✓ sig. —
Combined immunodeficiency, x-linked Sezary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IL2RG(3)
0.034 0.500 3.50e-3 4.52e-3 ✓ sig. —
Dementia in huntington’s disease Hepatolenticular degeneration
1 gene
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1 of 1 corroborated by 2+ sources
PRNP(2)
0.034 0.500 3.50e-3 4.52e-3 ✓ sig. —
Cortical development malformation Seborrhea-like dermatitis with psoriasiform elements
1 gene
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1 of 1 corroborated by 2+ sources
TBCD(2)
0.034 0.500 3.50e-3 4.52e-3 ✓ sig. —
Cortical development malformation Skraban-deardorff syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WDR62(2)
0.034 0.500 3.50e-3 4.52e-3 ✓ sig. —
Amish infantile epilepsy syndrome Hashimoto disease
1 gene
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1 of 1 corroborated by 2+ sources
ATXN2(2)
0.034 0.500 3.50e-3 4.52e-3 ✓ sig. —
Alexander disease Non-neoplastic peripheral nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
GFAP(3)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Non-neoplastic peripheral nervous system disease xeroderma pigmentosum group B
1 gene
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1 of 1 corroborated by 2+ sources
ERCC3(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Aplasia of the vermis Ziegler-huang syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC30A7(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Aplasia of the vermis nephronophthisis 1
1 gene
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1 of 1 corroborated by 2+ sources
NPHP1(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. Cluster 8 →
Cognition disorder ornithine carbamoyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
OTC(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Aplasia of the vermis orofaciodigital syndrome type 14
1 gene
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1 of 1 corroborated by 2+ sources
C2CD3(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. Cluster 8 →
GRHL3-related orofacial clefting Psoriasis vulgaris
1 gene
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1 of 1 corroborated by 2+ sources
GRHL3(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Aplasia of the vermis Heart defect, tongue hamartoma and polysyndactyly
1 gene
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1 of 1 corroborated by 2+ sources
WDPCP(4)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. Cluster 8 →
Distal myotilinopathy Non-neoplastic peripheral nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
MYOT(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Early-onset progressive neurodegeneration-blindness-ataxia-spasticity syndrome Non-neoplastic peripheral nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
UCHL1(3)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
intellectual developmental disorder 59 Psoriasis vulgaris
1 gene
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1 of 1 corroborated by 2+ sources
CAMK2G(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. Cluster 162 →
Cognition disorder Intracranial hypertension
1 gene
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SLC4A10(1)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Aplasia of the vermis joubert syndrome 21
1 gene
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1 of 1 corroborated by 2+ sources
CSPP1(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. Cluster 8 →
Aplasia of the vermis joubert syndrome 24
1 gene
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1 of 1 corroborated by 2+ sources
TCTN2(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. Cluster 8 →
Aplasia of the vermis joubert syndrome 30
1 gene
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1 of 1 corroborated by 2+ sources
ARMC9(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. Cluster 8 →
Cerebellar cortical atrophy Non-neoplastic peripheral nervous system disease
1 gene
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MYO5A(1)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Charcot-Marie-Tooth disease axonal type 2CC Non-neoplastic peripheral nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
NEFH(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. Cluster 243 →
Chops syndrome Cognition disorder
1 gene
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1 of 1 corroborated by 2+ sources
AFF4(3)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.