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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Mucosa-associated lymphoma Testicular germ cell tumor
1 gene
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1 of 1 corroborated by 2+ sources
BCL10(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Early-onset calcifying leukoencephalopathy-skeletal dysplasia Frontotemporal dementia
1 gene
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1 of 1 corroborated by 2+ sources
CSF1R(3)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Cerebrofaciothoracic dysplasia Oropharyngeal cancer
1 gene
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1 of 1 corroborated by 2+ sources
TMCO1(3)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
ciliary dyskinesia, primary, 54 Frontotemporal dementia
1 gene
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1 of 1 corroborated by 2+ sources
CFAP54(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. Cluster 102 →
Cleft palate Cleft palate with ankyloglossia
1 gene
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1 of 1 corroborated by 2+ sources
TBX22(5)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Cleft palate Cleft palate x-linked
1 gene
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1 of 1 corroborated by 2+ sources
TBX22(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Codas syndrome Congenital cataract
1 gene
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1 of 1 corroborated by 2+ sources
LONP1(6)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Cleft palate Congenital posterior urethral valves
1 gene
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1 of 1 corroborated by 2+ sources
BNC2(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Aortic stenosis Congenital progressive bone marrow failure-b-cell immunodeficiency-skeletal dysplasia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYSM1(3)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Congenital cataract Coralliform cataract
1 gene
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1 of 1 corroborated by 2+ sources
CRYGD(3)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. Cluster 43 →
Congenital cataract Deafness with cataract, intellectual disability, and polyneuropathy
1 gene
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1 of 1 corroborated by 2+ sources
PSMC3(4)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Abruzzo-erickson syndrome Cleft palate
1 gene
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1 of 1 corroborated by 2+ sources
TBX22(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
amyotrophic lateral sclerosis type 10 Frontotemporal dementia
1 gene
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1 of 1 corroborated by 2+ sources
TARDBP(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
amyotrophic lateral sclerosis type 12 Frontotemporal dementia
1 gene
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1 of 1 corroborated by 2+ sources
OPTN(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
amyotrophic lateral sclerosis type 9 Frontotemporal dementia
1 gene
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1 of 1 corroborated by 2+ sources
ANG(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Anomalous pulmonary venous Congenital cataract
1 gene
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PSMC3(1)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Aortic stenosis Brachyphalangy polydactyly tibial aplasia hypoplasia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HMGB1(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Brain abnormalities developmental delay facial dysmorphism intellectual disability syndrome Frontotemporal dementia
1 gene
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1 of 1 corroborated by 2+ sources
MEF2C(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Brain abnormalities neurodegeneration dysosteosclerosis Frontotemporal dementia
1 gene
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1 of 1 corroborated by 2+ sources
CSF1R(5)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
B-cell acute lymphoblastic leukemia Casgid syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GLS(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Cataract-growth hormone deficiency-skeletal dysplasia syndrome Congenital cataract
1 gene
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1 of 1 corroborated by 2+ sources
IARS2(5)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Cataract-microcornea-metabolic syndrome Congenital cataract
1 gene
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1 of 1 corroborated by 2+ sources
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
immunodeficiency 37 Testicular germ cell tumor
1 gene
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1 of 1 corroborated by 2+ sources
BCL10(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Frontotemporal dementia inclusion body myopathy with early-onset paget disease with or without frontotemporal dementia 2
1 gene
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1 of 1 corroborated by 2+ sources
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
B-cell acute lymphoblastic leukemia infantile cataract, skin abnormalities, glutamate excess, and impaired intellectual development
1 gene
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1 of 1 corroborated by 2+ sources
GLS(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.