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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cohen syndrome Meniere disease
1 gene
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1 of 1 corroborated by 2+ sources
VPS13B(8)
0.015 1.000 4.35e-3 5.46e-3 ✓ sig. —
combined immunodeficiency due to LRBA deficiency Meniere disease
1 gene
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1 of 1 corroborated by 2+ sources
LRBA(2)
0.015 1.000 4.35e-3 5.46e-3 ✓ sig. —
Corneal intraepithelial dyskeratosis-palmoplantar hyperkeratosis-laryngeal dyskeratosis syndrome Hypotension
1 gene
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1 of 1 corroborated by 2+ sources
NLRP1(4)
0.015 1.000 4.35e-3 5.46e-3 ✓ sig. —
Atrial tachyarrhythmia, infra-hisian cardiac conduction disease Meniere disease
1 gene
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TNNI3K(1)
0.015 1.000 4.35e-3 5.46e-3 ✓ sig. —
Autoinflammation with arthritis and dyskeratosis Hypotension
1 gene
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1 of 1 corroborated by 2+ sources
NLRP1(5)
0.015 1.000 4.35e-3 5.46e-3 ✓ sig. —
BBS10-related ciliopathy Macular degeneration
1 gene
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1 of 1 corroborated by 2+ sources
BBS10(2)
0.015 1.000 4.35e-3 5.46e-3 ✓ sig. —
dilated cardiomyopathy 1W Hirschsprung disease
1 gene
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1 of 1 corroborated by 2+ sources
VCL(2)
0.015 1.000 4.35e-3 5.46e-3 ✓ sig. —
glycogen storage disease III Meniere disease
1 gene
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1 of 1 corroborated by 2+ sources
AGL(2)
0.015 1.000 4.35e-3 5.46e-3 ✓ sig. —
Chromosome 17p13.3 microdeletion syndrome Hirschsprung disease
1 gene
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1 of 1 corroborated by 2+ sources
YWHAE(2)
0.015 1.000 4.35e-3 5.46e-3 ✓ sig. —
CNGA3-related retinopathy Macular degeneration
1 gene
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1 of 1 corroborated by 2+ sources
CNGA3(2)
0.015 1.000 4.35e-3 5.46e-3 ✓ sig. —
Meniere disease Peripheral neuropathy myopathy hoarseness hearing loss syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYH14(2)
0.015 1.000 4.35e-3 5.46e-3 ✓ sig. —
Meniere disease Peripheral neuropathy, myopathy, hoarseness, and hearing
1 gene
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1 of 1 corroborated by 2+ sources
MYH14(4)
0.015 1.000 4.35e-3 5.46e-3 ✓ sig. —
macrothrombocytopenia, isolated, 1, autosomal dominant Meniere disease
1 gene
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1 of 1 corroborated by 2+ sources
TUBB1(2)
0.015 1.000 4.35e-3 5.46e-3 ✓ sig. —
Hirschsprung disease Mowat-wilson syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZEB2(7)
0.015 1.000 4.35e-3 5.46e-3 ✓ sig. —
Hirschsprung disease Mucoepithelial dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SREBF1(4)
0.015 1.000 4.35e-3 5.46e-3 ✓ sig. —
Auditory system disease Trigeminal nerve disease
1 gene
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DCHS2(1)
0.059 0.167 4.28e-3 5.38e-3 ✓ sig. —
Congenital muscular dystrophy Marinesco-sjogren syndrome
1 gene
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1 of 1 corroborated by 2+ sources
INPP5K(4)
0.040 0.333 4.28e-3 5.38e-3 ✓ sig. —
Bladder disease Gastritis
1 gene
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ZNF385B(1)
0.040 0.333 4.28e-3 5.38e-3 ✓ sig. —
Lymphatic system disease Temporal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
SLC12A2(3)
0.029 0.500 4.28e-3 5.38e-3 ✓ sig. —
Bronchitis Male infertility acephalic spermatozoa
1 gene
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1 of 1 corroborated by 2+ sources
PMFBP1(2)
0.029 0.500 4.28e-3 5.38e-3 ✓ sig. —
Osteochondrodysplasias Smith-mccort dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
DYM(6)
0.029 0.500 4.28e-3 5.38e-3 ✓ sig. —
Conjunctival disease Transitional cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
DAPK1(2)
0.029 0.500 4.28e-3 5.38e-3 ✓ sig. —
Congenital cerebellar ataxia Temporal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
GRM1(3)
0.029 0.500 4.28e-3 5.38e-3 ✓ sig. —
17q24.2 microdeletion syndrome Sarcoma
1 gene
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1 of 1 corroborated by 2+ sources
BPTF(3)
0.029 0.500 4.28e-3 5.38e-3 ✓ sig. —
Intestinal hypomagnesemia Rod-cone dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
TRPM6(3)
0.029 0.500 4.28e-3 5.38e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.