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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Hypertryptophanemia Non-organic psychosis
1 gene
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1 of 1 corroborated by 2+ sources
TDO2(6)
0.014 1.000 4.48e-3 5.60e-3 ✓ sig. —
inherited pseudoxanthoma elasticum Urolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
ABCC6(2)
0.014 1.000 4.48e-3 5.60e-3 ✓ sig. —
Intellectual developmental disorder hypotonia spastic sleep Non-organic psychosis
1 gene
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1 of 1 corroborated by 2+ sources
ANK3(3)
0.014 1.000 4.48e-3 5.60e-3 ✓ sig. —
Intellectual disability, anterior maxillary protrusion, and strabismus Non-organic psychosis
1 gene
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1 of 1 corroborated by 2+ sources
SOBP(2)
0.014 1.000 4.48e-3 5.60e-3 ✓ sig. —
Cohen syndrome Urolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
VPS13B(8)
0.014 1.000 4.48e-3 5.60e-3 ✓ sig. —
2,8-dihydroxyadenine urolithiasis Urolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
APRT(2)
0.014 1.000 4.48e-3 5.60e-3 ✓ sig. —
3-hydroxyisobutyric aciduria Urolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
HIBADH(3)
0.014 1.000 4.48e-3 5.60e-3 ✓ sig. Cluster 178 →
Adenine phosphoribosyltransferase deficiency Urolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
APRT(3)
0.014 1.000 4.48e-3 5.60e-3 ✓ sig. —
Anterior maxillary protrusion-strabismus-intellectual disability syndrome Non-organic psychosis
1 gene
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1 of 1 corroborated by 2+ sources
SOBP(2)
0.014 1.000 4.48e-3 5.60e-3 ✓ sig. —
microcephalic osteodysplastic primordial dwarfism type II Non-organic psychosis
1 gene
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1 of 1 corroborated by 2+ sources
PCNT(2)
0.014 1.000 4.48e-3 5.60e-3 ✓ sig. —
Congenital impairment of spermatozoa motility Synovial sarcoma
1 gene
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1 of 1 corroborated by 2+ sources
SSX1(2)
0.038 0.333 4.47e-3 5.60e-3 ✓ sig. —
Anauxetic dysplasia Prion disease
1 gene
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1 of 1 corroborated by 2+ sources
POP1(6)
0.048 0.250 4.41e-3 5.53e-3 ✓ sig. —
Bronchiectasis Obstructive azoospermia
1 gene
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1 of 1 corroborated by 2+ sources
CFTR(4)
0.048 0.250 4.41e-3 5.53e-3 ✓ sig. —
Growth hormone deficiency Uinary system neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
WDR11(2)
0.028 0.500 4.41e-3 5.53e-3 ✓ sig. —
Sepsis Whim syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CXCR2(5)
0.028 0.500 4.41e-3 5.53e-3 ✓ sig. —
Sepsis X-linked lymphoproliferative syndrome
1 gene
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1 of 1 corroborated by 2+ sources
XIAP(5)
0.028 0.500 4.41e-3 5.53e-3 ✓ sig. —
Panic disorder Periventricular leukomalacia
1 gene
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1 of 1 corroborated by 2+ sources
PLEKHG1(2)
0.028 0.500 4.41e-3 5.53e-3 ✓ sig. —
Hepatic veno occlusive disease with immunodeficiency Lymphocytic b-cell leukemia
1 gene
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1 of 1 corroborated by 2+ sources
SP140(2)
0.028 0.500 4.41e-3 5.53e-3 ✓ sig. Cluster 225 →
Congenital chronic diarrhea with protein-losing enteropathy Triple negative breast cancer
1 gene
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1 of 1 corroborated by 2+ sources
PLVAP(3)
0.028 0.500 4.41e-3 5.53e-3 ✓ sig. —
Bone fracture Tolchin-le caignec syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOX6(4)
0.014 1.000 4.42e-3 5.53e-3 ✓ sig. —
Nervous system disease Vitamin e deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TTPA(4)
0.014 1.000 4.42e-3 5.53e-3 ✓ sig. —
Dubin-johnson syndrome Nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
ABCC2(6)
0.014 1.000 4.42e-3 5.53e-3 ✓ sig. —
Bone fracture Craniometadiaphyseal osteosclerosis with hip dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
AXIN1(4)
0.014 1.000 4.42e-3 5.53e-3 ✓ sig. —
Combined oxidative phosphorylation deficiency nephrotic syndrome, type 21
1 gene
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1 of 1 corroborated by 2+ sources
AVIL(2)
0.014 1.000 4.42e-3 5.53e-3 ✓ sig. —
Combined oxidative phosphorylation deficiency neurodevelopmental disorder with microcephaly, seizures, and cortical atrophy
1 gene
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1 of 1 corroborated by 2+ sources
VARS1(3)
0.014 1.000 4.42e-3 5.53e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.