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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Chondrodysplasia-pseudohypohermaphroditism syndrome Large artery stroke
1 gene
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1 of 1 corroborated by 2+ sources
HHAT(2)
0.013 1.000 5.07e-3 6.20e-3 ✓ sig. —
Intellectual developmental disorder cataracts myopathy Stevens-johnson syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZBTB20(2)
0.013 1.000 5.07e-3 6.20e-3 ✓ sig. —
Angiocentric glioma Osteonecrosis
1 gene
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1 of 1 corroborated by 2+ sources
QKI(2)
0.024 0.500 5.06e-3 6.20e-3 ✓ sig. —
Dyskinesia Genetic neurodegenerative disease
1 gene
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KIF5A(1)
0.034 0.333 5.06e-3 6.20e-3 ✓ sig. —
Amino acid metabolism disorder Citrullinemia
1 gene
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0.034 0.333 5.06e-3 6.20e-3 ✓ sig. —
Leukodystrophy Tay-sachs disease
1 gene
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1 of 1 corroborated by 2+ sources
HEXA(7)
0.034 0.333 5.06e-3 6.20e-3 ✓ sig. —
Adams-oliver syndrome Congenital abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
NOTCH1(4)
0.053 0.167 5.06e-3 6.20e-3 ✓ sig. —
1p36 deletion syndrome Anal polyp
1 gene
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1 of 1 corroborated by 2+ sources
CASZ1(3)
0.053 0.167 5.06e-3 6.20e-3 ✓ sig. —
Choroidal melanoma Neuropathy, ataxia, and retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
TDP1(2)
0.053 0.167 5.06e-3 6.20e-3 ✓ sig. —
Chromosome 20q11-q12 deletion syndrome Keratinocyte carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
EPB41L1(3)
0.013 1.000 5.00e-3 6.13e-3 ✓ sig. Cluster 29 →
histidinemia Keratinocyte carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
HAL(2)
0.013 1.000 5.00e-3 6.13e-3 ✓ sig. Cluster 29 →
Amphetamine or sympathomimetic abuse PDE6C-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
PDE6C(3)
0.013 1.000 5.00e-3 6.13e-3 ✓ sig. —
Keratinocyte carcinoma progressive essential tremor-speech impairment-facial dysmorphism-intellectual disability-abnormal behavior syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A17(2)
0.013 1.000 5.00e-3 6.13e-3 ✓ sig. Cluster 29 →
Amphetamine or sympathomimetic abuse Congenital microvillous atrophy
1 gene
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1 of 1 corroborated by 2+ sources
MYO5B(3)
0.013 1.000 5.00e-3 6.13e-3 ✓ sig. —
Hermansky-pudlak syndrome Sensory peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
DTNBP1(7)
0.056 0.143 4.99e-3 6.12e-3 ✓ sig. —
Cutaneous lupus erythematosus Peeling skin syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.056 0.143 4.99e-3 6.12e-3 ✓ sig. —
Post-operative acute kidney injury Renal hypertension
1 gene
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1 of 1 corroborated by 2+ sources
HSPA8(2)
0.056 0.143 4.99e-3 6.12e-3 ✓ sig. —
Hyperemesis gravidarum Mouth disease
1 gene
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1 of 1 corroborated by 2+ sources
GDF15(4)
0.043 0.250 4.93e-3 6.05e-3 ✓ sig. —
Cone dystrophy Cone-rod synaptic disorder
1 gene
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1 of 1 corroborated by 2+ sources
CABP4(4)
0.025 0.500 4.93e-3 6.05e-3 ✓ sig. —
Dermatitis Diffuse palmoplantar keratoderma
1 gene
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1 of 1 corroborated by 2+ sources
DSG1(3)
0.025 0.500 4.93e-3 6.05e-3 ✓ sig. —
Dejerine-sottas disease Distal amyotrophy
1 gene
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DHTKD1(1)
0.025 0.500 4.93e-3 6.05e-3 ✓ sig. —
Dejerine-sottas disease Lysine metabolism disorder
1 gene
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DHTKD1(1)
0.025 0.500 4.93e-3 6.05e-3 ✓ sig. —
Hypertrophic neuropathy Lysine metabolism disorder
1 gene
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DHTKD1(1)
0.025 0.500 4.93e-3 6.05e-3 ✓ sig. —
Lysine metabolism disorder Roussy-levy syndrome
1 gene
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DHTKD1(1)
0.025 0.500 4.93e-3 6.05e-3 ✓ sig. —
Cutaneous squamous cell carcinoma methylmalonic aciduria and homocystinuria
1 gene
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1 of 1 corroborated by 2+ sources
ZNF143(2)
0.025 0.500 4.93e-3 6.05e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.