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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
high myopia-sensorineural deafness syndrome Lewy body disease
1 gene
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1 of 1 corroborated by 2+ sources
SLITRK6(2)
0.010 1.000 6.17e-3 7.41e-3 ✓ sig. —
Hypochromic sideroblastic anemia Lewy body disease
1 gene
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1 of 1 corroborated by 2+ sources
STEAP3(6)
0.010 1.000 6.17e-3 7.41e-3 ✓ sig. —
Deafness and myopia Lewy body disease
1 gene
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1 of 1 corroborated by 2+ sources
SLITRK6(4)
0.010 1.000 6.17e-3 7.41e-3 ✓ sig. —
Brain cancer Burkitt lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
CCT6B(2)
0.042 0.200 6.16e-3 7.40e-3 ✓ sig. —
Brain cancer Periodontal disease
1 gene
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FCHO2(1)
0.042 0.200 6.16e-3 7.40e-3 ✓ sig. —
Bothnia retinal dystrophy Eye disease
1 gene
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1 of 1 corroborated by 2+ sources
RLBP1(6)
0.011 1.000 6.10e-3 7.34e-3 ✓ sig. —
Eye disease retinal dystrophy, optic nerve edema, splenomegaly, anhidrosis, and migraine headache syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ALPK1(2)
0.011 1.000 6.10e-3 7.34e-3 ✓ sig. Cluster 399 →
Eye disease RLBP1-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RLBP1(3)
0.011 1.000 6.10e-3 7.34e-3 ✓ sig. —
Eye disease Troyer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPART(4)
0.011 1.000 6.10e-3 7.34e-3 ✓ sig. —
Camos syndrome Mitral valve prolapse
1 gene
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1 of 1 corroborated by 2+ sources
ZNF592(2)
0.020 0.500 6.10e-3 7.33e-3 ✓ sig. —
Lafora disease Rolandic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
EPM2A(4)
0.020 0.500 6.10e-3 7.33e-3 ✓ sig. —
Lymphatic system disease Rolandic epilepsy
1 gene
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PTPRM(1)
0.020 0.500 6.10e-3 7.33e-3 ✓ sig. —
Microcephaly, epilepsy, and diabetes syndrome Rolandic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
IER3IP1(5)
0.020 0.500 6.10e-3 7.33e-3 ✓ sig. —
Genetic recurrent myoglobinuria Neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
LPIN1(2)
0.020 0.500 6.10e-3 7.33e-3 ✓ sig. —
Primary microcephaly-epilepsy-permanent neonatal diabetes syndrome Rolandic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
IER3IP1(3)
0.020 0.500 6.10e-3 7.33e-3 ✓ sig. —
Fatty liver Oxysterol accumulation disorder
1 gene
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1 of 1 corroborated by 2+ sources
CYP7B1(3)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Fatty liver long chain 3-hydroxyacyl-coa dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HADHA(2)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Fatty liver mitochondrial trifunctional protein deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HADHB(3)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Fatty liver Mucoepithelial dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SREBF1(3)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
C syndrome Digestive system disease
1 gene
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1 of 1 corroborated by 2+ sources
CD96(7)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Fatty liver Urban-schosser-spohr syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SREBF1(2)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Fatty liver X-linked ichthyosis with steryl-sulfatase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
STS(3)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Axonal neuropathy Digestive system disease
1 gene
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GBF1(1)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Digestive system disease Intestinal dysmotility syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANO1(4)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Digestive system disease Isolated anhidrosis
1 gene
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1 of 1 corroborated by 2+ sources
ITPR2(3)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.