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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Allan-herndon-dudley syndrome Hereditary spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
SLC16A2(3)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. Cluster 244 →
ALS2-related motor neuron disease Hereditary spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
ALS2(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
fanconi anemia complementation group i Hereditary spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
FANCI(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Cardioembolic stroke Chromosome 2p16.1-p15 deletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
USP34(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Cardioembolic stroke cardiomyopathy, dilated, 2d
1 gene
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1 of 1 corroborated by 2+ sources
RPL3L(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Congenital hypopituitarism Lung disease
1 gene
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1 of 1 corroborated by 2+ sources
FOXA2(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Cardioembolic stroke Neurodevelopmental disorder with dilated cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
CAMK2D(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Cardioembolic stroke neurodevelopmental disorder with hypotonia and variable intellectual and behavioral abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
POLR2A(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Hereditary spastic paraplegia neuropathy, hereditary sensory, type 1D
1 gene
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1 of 1 corroborated by 2+ sources
ATL1(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Ataxia, spastic, autosomal recessive with optic atrophy and impaired intellect Hereditary spastic paraplegia
1 gene
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SACS(1)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Autoinflammation and autoimmunity, systemic, with immune dysregulation 1 Lung disease
1 gene
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1 of 1 corroborated by 2+ sources
COPA(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Hereditary spastic paraplegia renpenning syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PQBP1(3)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Lung disease severe combined immunodeficiency due to DNA-PKcs deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PRKDC(3)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Hereditary spastic paraplegia Spastic ataxia of charlevoix-saguenay
1 gene
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1 of 1 corroborated by 2+ sources
SACS(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Hereditary spastic paraplegia T-B+ severe combined immunodeficiency due to JAK3 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
JAK3(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Cardioembolic stroke Tritanopia
1 gene
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1 of 1 corroborated by 2+ sources
OPN1SW(4)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Hereditary spastic paraplegia Troyer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPART(4)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Hereditary sensory and autonomic neuropathy with spastic paraplegia Hereditary spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
CCT5(3)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Hereditary spastic paraplegia hereditary spastic paraplegia 11
1 gene
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1 of 1 corroborated by 2+ sources
SPG11(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. Cluster 244 →
Hereditary spastic paraplegia hereditary spastic paraplegia 18
1 gene
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1 of 1 corroborated by 2+ sources
ERLIN2(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. Cluster 244 →
Hereditary spastic paraplegia hereditary spastic paraplegia 35
1 gene
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1 of 1 corroborated by 2+ sources
FA2H(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
Hereditary spastic paraplegia hereditary spastic paraplegia 62
1 gene
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1 of 1 corroborated by 2+ sources
ERLIN1(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. Cluster 244 →
Hereditary spastic paraplegia hereditary spastic paraplegia 8
1 gene
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1 of 1 corroborated by 2+ sources
WASHC5(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
hermansky-pudlak syndrome 2 Lung disease
1 gene
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1 of 1 corroborated by 2+ sources
AP3B1(2)
0.010 1.000 6.56e-3 7.82e-3 ✓ sig. —
IL21-related infantile inflammatory bowel disease Seasonal allergic rhinitis
1 gene
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1 of 1 corroborated by 2+ sources
IL21(2)
0.010 1.000 6.49e-3 7.75e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.