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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Congenital anomalies of the kidney and urinary tract Ochoa syndrome
1 gene
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HPSE2(1)
0.018 0.500 6.87e-3 8.15e-3 ✓ sig. —
Congenital anomalies of the kidney and urinary tract Townes-brocks syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SALL1(7)
0.018 0.500 6.87e-3 8.15e-3 ✓ sig. —
Congenital anomalies of the kidney and urinary tract Urofacial syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HPSE2(6)
0.018 0.500 6.87e-3 8.15e-3 ✓ sig. —
Angiocentric glioma Myeloproliferative disorder
1 gene
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1 of 1 corroborated by 2+ sources
MYB(2)
0.018 0.500 6.87e-3 8.15e-3 ✓ sig. —
Cystic leukoencephalopathy Hyperthyroidism
1 gene
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1 of 1 corroborated by 2+ sources
RNASET2(4)
0.018 0.500 6.87e-3 8.15e-3 ✓ sig. —
Bipolar depression Blepharospasm
1 gene
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1 of 1 corroborated by 2+ sources
DRD5(3)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
Bipolar depression schuurs-hoeijmakers syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PACS1(2)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
Behcet disease seckel syndrome 10
1 gene
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1 of 1 corroborated by 2+ sources
NSMCE2(2)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
Behcet disease Papa syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PSTPIP1(2)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
Bipolar depression hereditary sensory and autonomic neuropathy type 4
1 gene
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1 of 1 corroborated by 2+ sources
NTRK1(2)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
Adenosine deaminase 2 deficiency Behcet disease
1 gene
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1 of 1 corroborated by 2+ sources
ADA2(4)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
Bipolar depression combined immunodeficiency due to STK4 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
STK4(2)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
Aromatic l-amino-acid decarboxylase deficiency Bipolar depression
1 gene
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1 of 1 corroborated by 2+ sources
DDC(3)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
Autoinflammatory syndrome with cytopenia, hyperzincemia, and hypercalprotectinemia Behcet disease
1 gene
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1 of 1 corroborated by 2+ sources
PSTPIP1(2)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
Benign essential blepharospasm Bipolar depression
1 gene
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1 of 1 corroborated by 2+ sources
DRD5(2)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
Bipolar depression X-linked epilepsy with or without intellectual disability and dysmorphic features
1 gene
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1 of 1 corroborated by 2+ sources
GABRA3(4)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
Bipolar depression Neurogenic bladder
1 gene
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1 of 1 corroborated by 2+ sources
CHRM2(2)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
C1q deficiency Ovarian cysts
1 gene
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1 of 1 corroborated by 2+ sources
C1QB(6)
0.026 0.333 6.80e-3 8.08e-3 ✓ sig. —
Growth disorder Smith-magenis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RAI1(7)
0.026 0.333 6.80e-3 8.08e-3 ✓ sig. —
Benign prostatic hyperplasia Throat disease
1 gene
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GATA5(1)
0.026 0.333 6.80e-3 8.08e-3 ✓ sig. —
Circadian rhythm sleep disorder Diabetic ketoacidosis
1 gene
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CNTN5(1)
0.026 0.333 6.80e-3 8.08e-3 ✓ sig. —
Kleine-levin syndrome Mobius syndrome
1 gene
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PLXND1(1)
0.045 0.143 6.80e-3 8.08e-3 ✓ sig. —
Lactic acidosis Spinocerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
PMPCA(4)
0.010 1.000 6.75e-3 8.03e-3 ✓ sig. —
Cerebelloparenchymal disorder Spinocerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
PMPCA(5)
0.010 1.000 6.75e-3 8.03e-3 ✓ sig. —
Childhood-onset autosomal recessive slowly progressive spinocerebellar ataxia Spinocerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
TPP1(6)
0.010 1.000 6.75e-3 8.03e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.