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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Metabolic syndrome Ribose-5-phosphate isomerase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
RPIA(6)
0.001 1.000 8.46e-2 8.57e-2 Cluster 2 →
Metabolic syndrome Midline facial cleft
1 gene
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1 of 1 corroborated by 2+ sources
PCSK7(2)
0.001 1.000 8.46e-2 8.57e-2 —
COG8-congenital disorder of glycosylation Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COG8(2)
0.001 1.000 8.46e-2 8.57e-2 —
ciliary dyskinesia, primary, 49, without situs inversus Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CFAP74(2)
0.001 1.000 8.46e-2 8.57e-2 —
Cerebellar hypoplasia-intellectual disability-congenital microcephaly-dystonia-anemia-growth retardation syndrome Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
VPS4A(4)
0.001 1.000 8.46e-2 8.57e-2 —
Cimdag syndrome Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
VPS4A(3)
0.001 1.000 8.46e-2 8.57e-2 —
CEP164-related ciliopathy Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CEP164(2)
0.001 1.000 8.46e-2 8.57e-2 —
Systemic lupus erythematosus Thiamine metabolism dysfunction syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.002 0.500 8.31e-2 8.43e-2 —
Hepatocellular carcinoma Peroxisomal acyl-coa oxidase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ACOX1(5)
0.002 0.500 8.25e-2 8.37e-2 —
Atelis syndrome Lung cancer
1 gene
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1 of 1 corroborated by 2+ sources
SLF2(4)
0.002 0.500 8.25e-2 8.37e-2 —
Acral peeling skin syndrome Lung cancer
1 gene
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1 of 1 corroborated by 2+ sources
TGM5(2)
0.002 0.500 8.25e-2 8.37e-2 —
Congenital chronic diarrhea with protein-losing enteropathy Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
PLVAP(3)
0.002 0.500 8.25e-2 8.37e-2 —
Kidney disease multiple acyl-CoA dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ETFB(2)
0.002 0.333 8.05e-2 8.17e-2 —
Bipolar disorder leukodystrophy, hypomyelinating, 22
1 gene
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1 of 1 corroborated by 2+ sources
CLDN11(2)
0.001 1.000 7.92e-2 8.03e-2 —
Bipolar disorder Maleylacetoacetate isomerase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GSTZ1(5)
0.001 1.000 7.92e-2 8.03e-2 —
Benign essential blepharospasm Bipolar disorder
1 gene
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1 of 1 corroborated by 2+ sources
DRD5(2)
0.001 1.000 7.92e-2 8.03e-2 —
autosomal dominant cerebellar ataxia Bipolar disorder
1 gene
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1 of 1 corroborated by 2+ sources
NPTX1(2)
0.001 1.000 7.92e-2 8.03e-2 —
Bipolar disorder Cerebral arterial disease
1 gene
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ADGRE3(1)
0.001 1.000 7.92e-2 8.03e-2 —
Bipolar disorder Cayman type cerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
ATCAY(2)
0.001 1.000 7.92e-2 8.03e-2 —
Bipolar disorder Charcot-Marie-Tooth disease, axonal, type 2FF
1 gene
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1 of 1 corroborated by 2+ sources
CADM3(2)
0.001 1.000 7.92e-2 8.03e-2 —
Bipolar disorder Cerebrofacial arteriovenous metameric syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GNA14(2)
0.001 1.000 7.92e-2 8.03e-2 —
Bipolar disorder glycogen storage disease III
1 gene
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1 of 1 corroborated by 2+ sources
AGL(2)
0.001 1.000 7.92e-2 8.03e-2 —
Bipolar disorder dyskeratosis congenita and related telomere biology disorder
1 gene
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1 of 1 corroborated by 2+ sources
RPA1(2)
0.001 1.000 7.92e-2 8.03e-2 —
Bipolar disorder X-linked epilepsy with or without intellectual disability and dysmorphic features
1 gene
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1 of 1 corroborated by 2+ sources
GABRA3(4)
0.001 1.000 7.92e-2 8.03e-2 —
Bipolar disorder Oculocerebrodental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PIK3C2A(3)
0.001 1.000 7.92e-2 8.03e-2 Cluster 2 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.