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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Biotin-thiamine-responsive basal ganglia disease Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
SLC19A3(4)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Borjeson-forssman-lehmann syndrome Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
PHF6(7)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Brainstem atrophy Spastic paraplegia
1 gene
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MCOLN1(1)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
inherited pseudoxanthoma elasticum Nephrolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
ABCC6(2)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
kufor-rakeb syndrome Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
ATP13A2(7)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
hereditary spastic paraplegia 11 Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
SPG11(5)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. Cluster 244 →
hereditary spastic paraplegia 18 Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
ERLIN2(6)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. Cluster 244 →
hereditary spastic paraplegia 35 Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
FA2H(5)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
hereditary spastic paraplegia 62 Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
ERLIN1(5)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. Cluster 244 →
hereditary spastic paraplegia 8 Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
WASHC5(5)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Nephrolithiasis renal hypomagnesemia 3
1 gene
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1 of 1 corroborated by 2+ sources
CLDN16(2)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Nephrolithiasis renal tubular acidosis, distal, 2, with progressive sensorineural hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Nephrolithiasis retinitis pigmentosa 47
1 gene
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1 of 1 corroborated by 2+ sources
SAG(2)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Sensory ataxia Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
RNF170(5)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Spastic paraplegia Thiamine-responsive encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
SLC19A3(3)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Nephrolithiasis Uric acid urolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
ZNF365(3)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Nephrolithiasis Uridine-cytidineuria
1 gene
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1 of 1 corroborated by 2+ sources
SLC28A1(3)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Nephrolithiasis Vitamin k deficiency
1 gene
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BGLAP(1)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Nephrolithiasis X-linked nephrolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
CLCN5(4)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Spastic paraplegia Zhu-tokita-takenouchi-kim syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SON(7)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Hypomyelinating leukodystrophy Treacher collins syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POLR1C(8)
0.029 0.250 7.77e-3 9.06e-3 ✓ sig. —
Periprosthetic osteolysis Tooth abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
TBX3(2)
0.045 0.100 7.77e-3 9.06e-3 ✓ sig. —
Atherosclerosis primary ciliary dyskinesia 10
1 gene
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1 of 1 corroborated by 2+ sources
DNAAF2(2)
0.008 1.000 7.73e-3 9.02e-3 ✓ sig. —
Isolated sensorineural deafness Worster drought syndrome
1 gene
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TMTC4(1)
0.008 1.000 7.73e-3 9.02e-3 ✓ sig. Cluster 26 →
Acyl-coa dehydrogenase 9 deficiency Mitochondrial complex deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ACAD9(4)
0.008 1.000 7.73e-3 9.02e-3 ✓ sig. Cluster 50 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.