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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Autism primary ciliary dyskinesia 9
1 gene
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1 of 1 corroborated by 2+ sources
DNAI2(3)
0.001 1.000 9.50e-2 9.60e-2 —
Autism Corneal injury
1 gene
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1 of 1 corroborated by 2+ sources
ALDH3A1(2)
0.001 1.000 9.50e-2 9.60e-2 —
Autism Deafness, y-linked
1 gene
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1 of 1 corroborated by 2+ sources
TBL1Y(4)
0.001 1.000 9.50e-2 9.60e-2 Cluster 2 →
Autism hypotonia, infantile, with psychomotor retardation and characteristic facies 2
1 gene
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1 of 1 corroborated by 2+ sources
UNC80(3)
0.001 1.000 9.50e-2 9.60e-2 —
Autism Hemorrhagic destruction of the brain subependymal calcification and cataracts
1 gene
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1 of 1 corroborated by 2+ sources
JAM3(3)
0.001 1.000 9.50e-2 9.60e-2 —
Autism Cerebral arterial disease
1 gene
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ADGRE3(1)
0.001 1.000 9.50e-2 9.60e-2 —
Autism megalencephalic leukoencephalopathy with subcortical cysts 2a
1 gene
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1 of 1 corroborated by 2+ sources
HEPACAM(2)
0.001 1.000 9.50e-2 9.60e-2 —
Autism megalencephalic leukoencephalopathy with subcortical cysts 2B, remitting, with or without intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
HEPACAM(2)
0.001 1.000 9.50e-2 9.60e-2 —
Autism macular corneal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CHST6(3)
0.001 1.000 9.50e-2 9.60e-2 —
Autism methylmalonate semialdehyde dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ALDH6A1(3)
0.001 1.000 9.50e-2 9.60e-2 —
Autism mucopolysaccharidosis type 4A
1 gene
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1 of 1 corroborated by 2+ sources
GALNS(3)
0.001 1.000 9.50e-2 9.60e-2 —
Autism Intellectual developmental disorder growth seizures
1 gene
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1 of 1 corroborated by 2+ sources
ABCA2(4)
0.001 1.000 9.50e-2 9.60e-2 —
Autism Intellectual developmental disorder behavioral short stature
1 gene
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1 of 1 corroborated by 2+ sources
PUS7(4)
0.001 1.000 9.50e-2 9.60e-2 —
Degenerative polyarthritis Osteoarthritis
1 gene
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1 of 1 corroborated by 2+ sources
FRZB(3)
0.001 0.500 9.26e-2 9.38e-2 —
Crohn disease Progressive arterial occlusive disease with hypertension
1 gene
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1 of 1 corroborated by 2+ sources
DAP3(2)
0.001 0.500 8.76e-2 8.87e-2 —
fanconi anemia complementation group p Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLX4(2)
0.001 1.000 8.46e-2 8.57e-2 —
Metabolic syndrome opsismodysplasia
1 gene
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1 of 1 corroborated by 2+ sources
INPPL1(3)
0.001 1.000 8.46e-2 8.57e-2 Cluster 2 →
Metabolic syndrome Nasopalpebral lipoma-coloboma syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZDBF2(3)
0.001 1.000 8.46e-2 8.57e-2 —
Bilateral cleft lip Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PLEKHA5(2)
0.001 1.000 8.46e-2 8.57e-2 —
autosomal recessive osteopetrosis 8 Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SNX10(2)
0.001 1.000 8.46e-2 8.57e-2 —
Dihydropyrimidinase deficiency Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DPYS(5)
0.001 1.000 8.46e-2 8.57e-2 —
Dimethylglycine dehydrogenase deficiency Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DMGDH(7)
0.001 1.000 8.46e-2 8.57e-2 —
Bile acid conjugation defect Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BAAT(5)
0.001 1.000 8.46e-2 8.57e-2 —
Colobomatous macrophthalmia microcornea syndrome Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CRIM1(2)
0.001 1.000 8.46e-2 8.57e-2 —
Metabolic syndrome SF3B4-related acrofacial dysostosis
1 gene
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1 of 1 corroborated by 2+ sources
SF3B4(2)
0.001 1.000 8.46e-2 8.57e-2 —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.