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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Craniometadiaphyseal osteosclerosis with hip dysplasia Osteoporosis
1 gene
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1 of 1 corroborated by 2+ sources
AXIN1(4)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Anxiety disorder syndromic X-linked intellectual disability Snyder type
1 gene
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1 of 1 corroborated by 2+ sources
SMS(2)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Aica-ribosiduria Osteoporosis
1 gene
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1 of 1 corroborated by 2+ sources
ATIC(3)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Osteoporosis Tolchin-le caignec syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOX6(4)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Anxiety disorder TRAF3 haploinsufficiency
1 gene
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1 of 1 corroborated by 2+ sources
TRAF3(2)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Osteoporosis Vitamin k deficiency
1 gene
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BGLAP(1)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Heart disease Wolman disease
1 gene
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1 of 1 corroborated by 2+ sources
LIPA(5)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Osteoporosis Zaki syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WLS(3)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Anxiety disorder Expressive language delay
1 gene
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KLF7(1)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Hyaline fibromatosis Osteoporosis
1 gene
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1 of 1 corroborated by 2+ sources
ANTXR2(5)
0.007 1.000 9.48e-3 1.08e-2 ✓ sig. —
Allergic contact dermatitis Cortisone reductase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HSD11B1(5)
0.013 0.500 9.46e-3 1.08e-2 ✓ sig. —
lessel-kreienkamp syndrome Mesothelioma
1 gene
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1 of 1 corroborated by 2+ sources
AGO2(2)
0.007 1.000 9.42e-3 1.07e-2 ✓ sig. —
Mesothelioma non-severe combined immunodeficiency due to COPG1 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
COPG1(2)
0.007 1.000 9.42e-3 1.07e-2 ✓ sig. —
autoimmune lymphoproliferative syndrome type 2A Skin neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
CASP10(2)
0.007 1.000 9.42e-3 1.07e-2 ✓ sig. —
histidinemia Skin neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
HAL(2)
0.007 1.000 9.42e-3 1.07e-2 ✓ sig. Cluster 29 →
Skin neoplasms xeroderma pigmentosum group A
1 gene
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1 of 1 corroborated by 2+ sources
XPA(2)
0.007 1.000 9.42e-3 1.07e-2 ✓ sig. —
Skin neoplasms sorsby fundus dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
TIMP3(2)
0.007 1.000 9.42e-3 1.07e-2 ✓ sig. —
Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency Mitochondrial dna depletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SCO2(4)
0.029 0.200 9.38e-3 1.07e-2 ✓ sig. —
Autoimmune thyroid disease immunodeficiency 64
1 gene
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1 of 1 corroborated by 2+ sources
RASGRP1(2)
0.007 1.000 9.35e-3 1.07e-2 ✓ sig. —
Autoimmune thyroid disease isolated sulfite oxidase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SUOX(2)
0.007 1.000 9.35e-3 1.07e-2 ✓ sig. Cluster 39 →
Autoimmune thyroid disease Primary angle-closure glaucoma
1 gene
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1 of 1 corroborated by 2+ sources
SPATA13(4)
0.007 1.000 9.35e-3 1.07e-2 ✓ sig. Cluster 39 →
Autoimmune thyroid disease developmental and epileptic encephalopathy, 41
1 gene
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1 of 1 corroborated by 2+ sources
SLC1A2(2)
0.007 1.000 9.35e-3 1.07e-2 ✓ sig. —
Autoimmune thyroid disease Autoinflammation, immune dysregulation, and eosinophilia
1 gene
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1 of 1 corroborated by 2+ sources
JAK1(5)
0.007 1.000 9.35e-3 1.07e-2 ✓ sig. —
Autoimmune thyroid disease autosomal systemic lupus erythematosus type 16
1 gene
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1 of 1 corroborated by 2+ sources
0.007 1.000 9.35e-3 1.07e-2 ✓ sig. —
Bradyopsia Leber congenital amaurosis
1 gene
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1 of 1 corroborated by 2+ sources
RGS9(3)
0.014 0.500 9.33e-3 1.06e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.