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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Kidney disease multiple acyl-CoA dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ETFB(2)
0.002 0.333 8.05e-2 8.17e-2 —
Congenital chronic diarrhea with protein-losing enteropathy Hepatocellular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
PLVAP(3)
0.002 0.500 8.25e-2 8.37e-2 —
Hepatocellular carcinoma Peroxisomal acyl-coa oxidase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ACOX1(5)
0.002 0.500 8.25e-2 8.37e-2 —
Atelis syndrome Lung cancer
1 gene
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1 of 1 corroborated by 2+ sources
SLF2(4)
0.002 0.500 8.25e-2 8.37e-2 —
Acral peeling skin syndrome Lung cancer
1 gene
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1 of 1 corroborated by 2+ sources
TGM5(2)
0.002 0.500 8.25e-2 8.37e-2 —
Systemic lupus erythematosus Thiamine metabolism dysfunction syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.002 0.500 8.31e-2 8.43e-2 —
Metabolic syndrome Midline facial cleft
1 gene
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1 of 1 corroborated by 2+ sources
PCSK7(2)
0.001 1.000 8.46e-2 8.57e-2 —
fanconi anemia complementation group p Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLX4(2)
0.001 1.000 8.46e-2 8.57e-2 —
Colobomatous macrophthalmia microcornea syndrome Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CRIM1(2)
0.001 1.000 8.46e-2 8.57e-2 —
CEP164-related ciliopathy Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CEP164(2)
0.001 1.000 8.46e-2 8.57e-2 —
Cerebellar hypoplasia-intellectual disability-congenital microcephaly-dystonia-anemia-growth retardation syndrome Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
VPS4A(4)
0.001 1.000 8.46e-2 8.57e-2 —
ciliary dyskinesia, primary, 49, without situs inversus Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CFAP74(2)
0.001 1.000 8.46e-2 8.57e-2 —
Cimdag syndrome Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
VPS4A(3)
0.001 1.000 8.46e-2 8.57e-2 —
COG8-congenital disorder of glycosylation Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COG8(2)
0.001 1.000 8.46e-2 8.57e-2 —
autosomal recessive osteopetrosis 8 Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SNX10(2)
0.001 1.000 8.46e-2 8.57e-2 —
Bilateral cleft lip Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PLEKHA5(2)
0.001 1.000 8.46e-2 8.57e-2 —
Dihydropyrimidinase deficiency Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DPYS(5)
0.001 1.000 8.46e-2 8.57e-2 —
Dimethylglycine dehydrogenase deficiency Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DMGDH(7)
0.001 1.000 8.46e-2 8.57e-2 —
Metabolic syndrome Ribose-5-phosphate isomerase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
RPIA(6)
0.001 1.000 8.46e-2 8.57e-2 Cluster 2 →
Metabolic syndrome SF3B4-related acrofacial dysostosis
1 gene
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1 of 1 corroborated by 2+ sources
SF3B4(2)
0.001 1.000 8.46e-2 8.57e-2 —
Metabolic syndrome Nasopalpebral lipoma-coloboma syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZDBF2(3)
0.001 1.000 8.46e-2 8.57e-2 —
Metabolic syndrome opsismodysplasia
1 gene
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1 of 1 corroborated by 2+ sources
INPPL1(3)
0.001 1.000 8.46e-2 8.57e-2 Cluster 2 →
Bile acid conjugation defect Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BAAT(5)
0.001 1.000 8.46e-2 8.57e-2 —
Crohn disease Progressive arterial occlusive disease with hypertension
1 gene
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1 of 1 corroborated by 2+ sources
DAP3(2)
0.001 0.500 8.76e-2 8.87e-2 —
Degenerative polyarthritis Osteoarthritis
1 gene
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1 of 1 corroborated by 2+ sources
FRZB(3)
0.001 0.500 9.26e-2 9.38e-2 —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.