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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Parkinson disease Thyroid hemiagenesis
1 gene
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1 of 1 corroborated by 2+ sources
VPS13C(6)
0.002 0.500 6.75e-2 6.90e-2 —
Breast cancer Thrombocytopenia with platelet secretion defect
1 gene
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1 of 1 corroborated by 2+ sources
SLFN14(3)
0.001 1.000 6.92e-2 7.06e-2 —
Breast cancer thrombotic disease
1 gene
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1 of 1 corroborated by 2+ sources
MAST2(2)
0.001 1.000 6.92e-2 7.06e-2 —
Breast cancer tooth agenesis, selective, 3
1 gene
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1 of 1 corroborated by 2+ sources
PAX9(2)
0.001 1.000 6.92e-2 7.06e-2 —
Breast cancer Curly hair ankyloblepharon nail dysplasia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RIPK4(3)
0.001 1.000 6.92e-2 7.06e-2 —
Breast cancer glycosylphosphatidylinositol biosynthesis defect 17
1 gene
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1 of 1 corroborated by 2+ sources
PIGH(2)
0.001 1.000 6.92e-2 7.06e-2 —
Breast cancer GPR161-related medulloblastoma predisposition
1 gene
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1 of 1 corroborated by 2+ sources
GPR161(2)
0.001 1.000 6.92e-2 7.06e-2 —
Breast cancer platelet-type bleeding disorder 20
1 gene
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1 of 1 corroborated by 2+ sources
SLFN14(2)
0.001 1.000 6.92e-2 7.06e-2 —
Breast cancer Congenital cataract severe neonatal hepatopathy developmental delay syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CYP51A1(3)
0.001 1.000 6.92e-2 7.06e-2 —
Breast cancer scalp-ear-nipple syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCTD1(2)
0.001 1.000 6.92e-2 7.06e-2 —
Acyl-coa binding domain containing protein 5 deficiency Breast cancer
1 gene
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1 of 1 corroborated by 2+ sources
ACBD5(3)
0.001 1.000 6.92e-2 7.06e-2 —
Breast cancer NTHL1-deficiency tumor predisposition syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NTHL1(2)
0.001 1.000 6.92e-2 7.06e-2 —
Breast cancer Midline facial cleft
1 gene
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1 of 1 corroborated by 2+ sources
PCSK7(2)
0.001 1.000 6.92e-2 7.06e-2 —
BBS2-related ciliopathy Breast cancer
1 gene
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1 of 1 corroborated by 2+ sources
BBS2(2)
0.001 1.000 6.92e-2 7.06e-2 —
Breast cancer C3hex olfactory ability
1 gene
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1 of 1 corroborated by 2+ sources
OR2J3(2)
0.001 1.000 6.92e-2 7.06e-2 Cluster 20 →
Asthma Udp-glucose-hexose-1-phosphate uridylyltransferase
1 gene
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1 of 1 corroborated by 2+ sources
GALT(2)
0.001 1.000 6.94e-2 7.08e-2 —
Asthma Diaphanospondylodysostosis
1 gene
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1 of 1 corroborated by 2+ sources
BMPER(6)
0.001 1.000 6.94e-2 7.08e-2 —
Asthma Rothmund-Thomson syndrome type 1
1 gene
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1 of 1 corroborated by 2+ sources
ANAPC1(2)
0.001 1.000 6.94e-2 7.08e-2 —
Asthma Sarcosinemia
1 gene
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1 of 1 corroborated by 2+ sources
SARDH(7)
0.001 1.000 6.94e-2 7.08e-2 —
Asthma SEC61B-related polycystic liver disease
1 gene
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1 of 1 corroborated by 2+ sources
SEC61B(2)
0.001 1.000 6.94e-2 7.08e-2 —
Asthma seizures, early-onset, with neurodegeneration and brain calcifications
1 gene
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1 of 1 corroborated by 2+ sources
NRROS(2)
0.001 1.000 6.94e-2 7.08e-2 —
Asthma Mineralocortocoid excess
1 gene
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1 of 1 corroborated by 2+ sources
HSD11B2(7)
0.001 1.000 6.94e-2 7.08e-2 —
Asthma Catifa syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RIC1(5)
0.001 1.000 6.94e-2 7.08e-2 —
Asthma Charcot-Marie-Tooth disease, axonal, type 2FF
1 gene
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1 of 1 corroborated by 2+ sources
CADM3(2)
0.001 1.000 6.94e-2 7.08e-2 —
Asthma Cleft palate proliferative retinopathy developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
LRRC32(4)
0.001 1.000 6.94e-2 7.08e-2 —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.