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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cataract-growth hormone deficiency-skeletal dysplasia syndrome Leigh syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IARS2(6)
0.009 1.000 6.95e-3 8.23e-3 ✓ sig. —
Charcot-Marie-Tooth disease axonal type 2Z Leigh syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MORC2(2)
0.009 1.000 6.95e-3 8.23e-3 ✓ sig. —
Childhood-onset dystonia Leigh syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MECR(2)
0.009 1.000 6.95e-3 8.23e-3 ✓ sig. —
Childhood-onset dystonia with optic atrophy and basal ganglia abnormalities Leigh syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MECR(5)
0.009 1.000 6.95e-3 8.23e-3 ✓ sig. —
Codas syndrome Leigh syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LONP1(7)
0.009 1.000 6.95e-3 8.23e-3 ✓ sig. Cluster 50 →
Hepatoencephalopathy due to combined oxidative phosphorylation defect Leigh syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GFM1(5)
0.009 1.000 6.95e-3 8.23e-3 ✓ sig. —
Hurthle cell thyroid cancer Leigh syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NDUFA13(4)
0.009 1.000 6.95e-3 8.23e-3 ✓ sig. —
Leigh syndrome mitochondrial short-chain enoyl-coa hydratase 1 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ECHS1(4)
0.009 1.000 6.95e-3 8.23e-3 ✓ sig. Cluster 50 →
Leigh syndrome optic atrophy 13 with retinal and foveal abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
SSBP1(2)
0.009 1.000 6.95e-3 8.23e-3 ✓ sig. —
Leigh syndrome pyruvate dehydrogenase E3 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DLD(2)
0.009 1.000 6.95e-3 8.23e-3 ✓ sig. —
Leigh syndrome Thiamine-responsive encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
SLC19A3(4)
0.009 1.000 6.95e-3 8.23e-3 ✓ sig. —
Proliferative diabetic retinopathy Pseudo-torch syndrome
1 gene
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1 of 1 corroborated by 2+ sources
STAT2(5)
0.026 0.333 7.00e-3 8.28e-3 ✓ sig. —
Hodgkin lymphoma marshall-smith syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NFIX(2)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Atrial flutter Wiskott-aldrich syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WIPF1(6)
0.012 0.500 1.05e-2 1.19e-2 ✓ sig. —
Cardioembolic stroke Wiskott-aldrich syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WIPF1(6)
0.010 0.500 1.31e-2 1.46e-2 ✓ sig. —
Leigh syndrome Sandhoff disease
1 gene
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1 of 1 corroborated by 2+ sources
GFM2(2)
0.009 0.500 1.39e-2 1.54e-2 ✓ sig. Cluster 50 →
Barth syndrome Cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
0.004 1.000 1.58e-2 1.75e-2 ✓ sig. —
Barth syndrome Dilated cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
0.004 1.000 1.77e-2 1.94e-2 ✓ sig. —
Leigh syndrome Lipoyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
LIPT1(7)
0.009 0.333 2.07e-2 2.25e-2 ✓ sig. —
Deeah syndrome Non-specific syndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
MADD(4)
0.003 1.000 2.39e-2 2.57e-2 ✓ sig. —
Deeah syndrome Open angle glaucoma
1 gene
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1 of 1 corroborated by 2+ sources
MADD(4)
0.003 1.000 2.40e-2 2.58e-2 ✓ sig. Cluster 240 →
Global developmental delay marshall-smith syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NFIX(2)
0.003 1.000 2.40e-2 2.58e-2 ✓ sig. —
Deeah syndrome Migraine
1 gene
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1 of 1 corroborated by 2+ sources
MADD(4)
0.002 1.000 2.62e-2 2.80e-2 ✓ sig. —
Deeah syndrome Kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
MADD(4)
0.002 1.000 2.76e-2 2.94e-2 ✓ sig. —
Barth syndrome Coronary artery disease
1 gene
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1 of 1 corroborated by 2+ sources
0.001 1.000 7.42e-2 7.55e-2 —

Showing 25 of 202 matching pairs, sorted by significance (ascending). Click a column header to sort.