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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
myopathy, centronuclear, 5 Obstructive pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
SPEG(2)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
myopathy, centronuclear, 5 Oligodendroglioma
1 gene
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1 of 1 corroborated by 2+ sources
SPEG(2)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
nanophthalmos 4 Oligodendroglioma
1 gene
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1 of 1 corroborated by 2+ sources
TMEM98(2)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
neurodevelopmental disorder with spasticity, seizures, and brain abnormalities Obstructive pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
NSRP1(2)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. Cluster 252 →
HAVCR2-related cancer predisposition Oligodendroglioma
1 gene
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1 of 1 corroborated by 2+ sources
HAVCR2(2)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
hereditary spastic paraplegia 18 Oligodendroglioma
1 gene
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1 of 1 corroborated by 2+ sources
ERLIN2(2)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
hermansky-pudlak syndrome 1 Oligodendroglioma
1 gene
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1 of 1 corroborated by 2+ sources
HPS1(2)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
Erythrocyte amp deaminase deficiency Obstructive pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
AMPD3(5)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
Oligodendroglioma progressive pseudorheumatoid arthropathy of childhood
1 gene
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1 of 1 corroborated by 2+ sources
CCN6(2)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
Dimethylglycine dehydrogenase deficiency Obstructive pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
DMGDH(7)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
Oligodendroglioma retinitis pigmentosa 86
1 gene
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1 of 1 corroborated by 2+ sources
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
Obstructive pulmonary disease seckel syndrome 10
1 gene
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1 of 1 corroborated by 2+ sources
NSMCE2(2)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
Oligodendroglioma seckel syndrome 10
1 gene
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1 of 1 corroborated by 2+ sources
NSMCE2(2)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
Colobomatous macrophthalmia microcornea syndrome Obstructive pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
CRIM1(2)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
Colobomatous macrophthalmia microcornea syndrome Oligodendroglioma
1 gene
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1 of 1 corroborated by 2+ sources
CRIM1(2)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
Congenital arthrogryposis with anterior horn cell disease Oligodendroglioma
1 gene
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1 of 1 corroborated by 2+ sources
GLE1(3)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
congenital disorder of glycosylation with defective fucosylation 1 Obstructive pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
FUT8(2)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
Combined deficiency of sialidase and beta galactosidase Desbuquois syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CTSA(2)
0.002 1.000 3.68e-2 3.87e-2 ✓ sig. —
Combined immunodeficiency with autoimmunity and spondylometaphyseal dysplasia Desbuquois syndrome
1 gene
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ACP5(1)
0.002 1.000 3.68e-2 3.87e-2 ✓ sig. —
congenital disorder of glycosylation type 1E Desbuquois syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DPM1(2)
0.002 1.000 3.68e-2 3.87e-2 ✓ sig. —
Cataract-neurodevelopmental syndrome Desbuquois syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FAR1(4)
0.002 1.000 3.68e-2 3.87e-2 ✓ sig. —
Cathepsin a-related arteriopathy, strokes, and leukoencephalopathy Desbuquois syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CTSA(3)
0.002 1.000 3.68e-2 3.87e-2 ✓ sig. —
Cerebellar ataxia, brain abnormalities, and cardiac conduction defects Desbuquois syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EXOSC5(5)
0.002 1.000 3.68e-2 3.87e-2 ✓ sig. —
Cerebrocostomandibular syndrome Desbuquois syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SNRPB(6)
0.002 1.000 3.68e-2 3.87e-2 ✓ sig. —
chondrodysplasia with joint dislocations, gpapp type Desbuquois syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BPNT2(2)
0.002 1.000 3.68e-2 3.87e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.