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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Genetic generalized epilepsy Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
TNK2(2)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
Parkinson disease Partial deletion of short arm of chromosome 3
1 gene
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1 of 1 corroborated by 2+ sources
CHL1(2)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. Cluster 2 →
Parkinson disease progressive pseudorheumatoid arthropathy of childhood
1 gene
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1 of 1 corroborated by 2+ sources
CCN6(2)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
hypomyelinating leukodystrophy 5 Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
HYCC1(2)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
Parkinson disease spermatogenic failure 39
1 gene
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1 of 1 corroborated by 2+ sources
DNAH17(2)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
Demyelinating leukodystrophy Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
LMNB1(2)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
Diabetes deafness developmental delay and short stature syndrome Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
MANF(3)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. Cluster 2 →
Dystonia-parkinsonism-hypermanganesemia syndrome Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
neurodevelopmental disorder, nonprogressive, with spasticity and transient opisthotonus Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
TNR(2)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
Cystinosis Dilated cardiomyopathy
1 gene
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TAX1BP3(1)
0.004 0.500 3.51e-2 3.72e-2 ✓ sig. —
Gastroesophageal reflux disease Keratosis palmoplantaris papulosa
1 gene
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1 of 1 corroborated by 2+ sources
AAGAB(3)
0.004 0.500 3.59e-2 3.80e-2 ✓ sig. —
Amelocerebrohypohidrotic syndrome Depression
1 gene
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1 of 1 corroborated by 2+ sources
SLC13A5(2)
0.004 0.500 3.59e-2 3.80e-2 ✓ sig. —
1q44 microdeletion syndrome Oligodendroglioma
1 gene
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1 of 1 corroborated by 2+ sources
HNRNPU(3)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
Alanine-glyoxylate aminotransferase deficiency Oligodendroglioma
1 gene
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1 of 1 corroborated by 2+ sources
AGXT(2)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
amyotrophic lateral sclerosis type 23 Obstructive pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
ANXA11(2)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
Inflammatory demyelinating polyneuropathy Oligodendroglioma
1 gene
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CNBD1(1)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
Intellectual developmental disorder growth microcephaly Oligodendroglioma
1 gene
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1 of 1 corroborated by 2+ sources
CTCF(2)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
bleeding disorder, platelet-type, 22 Oligodendroglioma
1 gene
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1 of 1 corroborated by 2+ sources
EPHB2(2)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
C syndrome Oligodendroglioma
1 gene
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1 of 1 corroborated by 2+ sources
CD96(7)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
Arthrogryposis with anterior horn cell disease Oligodendroglioma
1 gene
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1 of 1 corroborated by 2+ sources
GLE1(2)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
b-cell immunodeficiency, distal limb anomalies, and urogenital malformations Obstructive pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
TOP2B(2)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
Obstructive pulmonary disease Young syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CFAP221(3)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
ciliary dyskinesia, primary, 42 Obstructive pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
MCIDAS(2)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
lysinuric protein intolerance Oligodendroglioma
1 gene
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1 of 1 corroborated by 2+ sources
SLC7A7(2)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —
LZTFL1-related ciliopathy Oligodendroglioma
1 gene
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1 of 1 corroborated by 2+ sources
LZTFL1(2)
0.002 1.000 3.63e-2 3.83e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.