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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Breast neoplasms neurodevelopmental disorder-craniofacial dysmorphism-cardiac defect-hip dysplasia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HNRNPK(2)
0.002 1.000 3.36e-2 3.55e-2 ✓ sig. —
Breast neoplasms Intellectual developmental disorder growth other organ
1 gene
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1 of 1 corroborated by 2+ sources
PPM1D(3)
0.002 1.000 3.36e-2 3.55e-2 ✓ sig. —
Breast neoplasms Intellectual developmental disorder peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
NUDT2(6)
0.002 1.000 3.36e-2 3.55e-2 ✓ sig. —
Breast neoplasms Intellectual developmental disorder seizures movement
1 gene
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1 of 1 corroborated by 2+ sources
PDE2A(5)
0.002 1.000 3.36e-2 3.55e-2 ✓ sig. —
Breast neoplasms Congenital alpha-fetoprotein deficiency
1 gene
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1 of 1 corroborated by 2+ sources
AFP(3)
0.002 1.000 3.36e-2 3.55e-2 ✓ sig. —
Breast neoplasms Diabetic macular edema
1 gene
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1 of 1 corroborated by 2+ sources
MRPL19(2)
0.002 1.000 3.36e-2 3.55e-2 ✓ sig. —
Breast neoplasms Diffuse lymphatic malformation
1 gene
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1 of 1 corroborated by 2+ sources
ARAF(2)
0.002 1.000 3.36e-2 3.55e-2 ✓ sig. Cluster 5 →
Breast neoplasms Prognathism
1 gene
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1 of 1 corroborated by 2+ sources
ADAMTS1(2)
0.002 1.000 3.36e-2 3.55e-2 ✓ sig. —
Intellectual disability Kleine-levin syndrome
1 gene
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NAA10(1)
0.012 0.143 3.40e-2 3.60e-2 ✓ sig. —
immunodeficiency, common variable, 3 Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
CD19(2)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
inherited interstitial lung disease Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
LAMP3(2)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. Cluster 2 →
khan-khan-katsanis syndrome Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
NCAPG2(3)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
kidney disorder Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC41A1(2)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
kufor-rakeb syndrome Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
ATP13A2(3)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
Parkinson disease Transaldolase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TALDO1(6)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
Autism-epilepsy syndrome Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
BCKDK(2)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
Childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
UBTF(6)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. Cluster 2 →
Chromosome 15q deletion syndrome Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
MCTP2(3)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
Acantholytic blistering of oral and laryngeal mucosa Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
DSG3(4)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
Adult-onset dystonia-parkinsonism Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
amyotrophic lateral sclerosis type 9 Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
ANG(2)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
Antibody deficiency Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
CD19(2)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
microcephaly 26, primary, autosomal dominant Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
LMNB1(2)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
Branched-chain keto acid dehydrogenase kinase deficiency Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
BCKDK(6)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
fanconi anemia complementation group f Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
FANCF(2)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.