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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Glycerol kinase deficiency Myocardial ischemia
1 gene
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1 of 1 corroborated by 2+ sources
GK(2)
0.003 1.000 2.54e-2 2.71e-2 ✓ sig. —
Hmg-coa synthase deficiency Myocardial ischemia
1 gene
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1 of 1 corroborated by 2+ sources
HMGCS2(4)
0.003 1.000 2.54e-2 2.71e-2 ✓ sig. —
hypotaurinemic retinal degeneration and cardiomyopathy Myocardial ischemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A6(3)
0.003 1.000 2.54e-2 2.71e-2 ✓ sig. —
Intellectual developmental disorder dysmorphic facial Irritable bowel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SETD5(2)
0.007 0.333 2.59e-2 2.77e-2 ✓ sig. —
Advanced sleep phase syndrome Irritable bowel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PER2(4)
0.007 0.333 2.59e-2 2.77e-2 ✓ sig. —
Cataract Congenital lamellar cataract
1 gene
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1 of 1 corroborated by 2+ sources
HSF4(5)
0.005 0.500 2.59e-2 2.77e-2 ✓ sig. Cluster 43 →
Intellectual developmental disorder dysmorphic ptosis Post-traumatic stress disorder
1 gene
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1 of 1 corroborated by 2+ sources
RPL10L(2)
0.005 0.500 2.62e-2 2.80e-2 ✓ sig. —
Candle syndrome Iga nephropathy
1 gene
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1 of 1 corroborated by 2+ sources
PSMB8(2)
0.005 0.500 2.62e-2 2.80e-2 ✓ sig. —
Fructokinase deficiency Post-traumatic stress disorder
1 gene
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1 of 1 corroborated by 2+ sources
CGREF1(2)
0.005 0.500 2.62e-2 2.80e-2 ✓ sig. —
Intellectual developmental disorder neuropsychiatric Migraine
1 gene
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1 of 1 corroborated by 2+ sources
SLC45A1(4)
0.002 1.000 2.62e-2 2.80e-2 ✓ sig. —
Migraine neurodevelopmental disorder with hypotonia and variable intellectual and behavioral abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
POLR2A(2)
0.002 1.000 2.62e-2 2.80e-2 ✓ sig. —
Catatonia Migraine
1 gene
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1 of 1 corroborated by 2+ sources
CHRM4(3)
0.002 1.000 2.62e-2 2.80e-2 ✓ sig. —
Deeah syndrome Migraine
1 gene
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1 of 1 corroborated by 2+ sources
MADD(4)
0.002 1.000 2.62e-2 2.80e-2 ✓ sig. —
Migraine severe combined immunodeficiency due to DCLRE1C deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DCLRE1C(2)
0.002 1.000 2.62e-2 2.80e-2 ✓ sig. —
Migraine T-cell immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
FOXI3(2)
0.002 1.000 2.62e-2 2.80e-2 ✓ sig. —
Migraine Trichilemmal cyst
1 gene
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1 of 1 corroborated by 2+ sources
BPIFC(3)
0.002 1.000 2.62e-2 2.80e-2 ✓ sig. Cluster 78 →
Migraine Weiss-kruszka syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZNF462(5)
0.002 1.000 2.62e-2 2.80e-2 ✓ sig. —
Androgenetic alopecia Weiss-kruszka syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZNF462(5)
0.002 1.000 2.65e-2 2.83e-2 ✓ sig. —
Androgenetic alopecia Catifa syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RIC1(5)
0.002 1.000 2.65e-2 2.83e-2 ✓ sig. —
Androgenetic alopecia Intellectual developmental disorder growth metabolic
1 gene
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1 of 1 corroborated by 2+ sources
DIP2B(3)
0.002 1.000 2.65e-2 2.83e-2 ✓ sig. —
Androgenetic alopecia isovaleric acidemia
1 gene
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1 of 1 corroborated by 2+ sources
IVD(2)
0.002 1.000 2.65e-2 2.83e-2 ✓ sig. —
Androgenetic alopecia Combined oxidative phosphorylation defect
1 gene
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1 of 1 corroborated by 2+ sources
WARS2(3)
0.002 1.000 2.65e-2 2.83e-2 ✓ sig. —
Androgenetic alopecia exostoses, multiple, type 2
1 gene
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1 of 1 corroborated by 2+ sources
EXT2(2)
0.002 1.000 2.65e-2 2.83e-2 ✓ sig. —
Androgenetic alopecia hao-fountain syndrome
1 gene
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1 of 1 corroborated by 2+ sources
USP7(2)
0.002 1.000 2.65e-2 2.83e-2 ✓ sig. —
Androgenetic alopecia hypomyelinating leukodystrophy 3
1 gene
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1 of 1 corroborated by 2+ sources
AIMP1(2)
0.002 1.000 2.65e-2 2.83e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.