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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
A4GALT-congenital disorder of glycosylation Venous thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
A4GALT(2)
0.003 1.000 2.22e-2 2.40e-2 ✓ sig. —
Developmental delay with overweight and facial dysmorphism Venous thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
SRRM2(3)
0.003 1.000 2.22e-2 2.40e-2 ✓ sig. —
Intellectual developmental disorder growth metabolic Venous thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
DIP2B(3)
0.003 1.000 2.22e-2 2.40e-2 ✓ sig. Cluster 78 →
Carnitine palmitoyltransferase deficiency Congenital neurologic anomalies
1 gene
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1 of 1 corroborated by 2+ sources
CPT2(8)
0.008 0.333 2.22e-2 2.41e-2 ✓ sig. —
Biliary tract cancer Uncombable hair syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TGM3(6)
0.008 0.333 2.28e-2 2.47e-2 ✓ sig. —
Biliary tract cancer Paraquat lung disease
1 gene
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1 of 1 corroborated by 2+ sources
SMAD7(3)
0.008 0.333 2.28e-2 2.47e-2 ✓ sig. —
Atherosclerosis Salt-sensitive hypertension
1 gene
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ADD1(1)
0.008 0.333 2.30e-2 2.49e-2 ✓ sig. —
Brody myopathy Congestive heart failure
1 gene
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1 of 1 corroborated by 2+ sources
ATP2A1(6)
0.006 0.500 2.31e-2 2.49e-2 ✓ sig. —
Butyryl-coa dehydrogenase deficiency Congestive heart failure
1 gene
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1 of 1 corroborated by 2+ sources
ACADS(2)
0.006 0.500 2.31e-2 2.49e-2 ✓ sig. —
Congestive heart failure Lewis lung carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
TXNRD1(2)
0.006 0.500 2.31e-2 2.49e-2 ✓ sig. —
LZTFL1-related ciliopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
LZTFL1(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Mak-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
MAK(7)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
microcephaly and chorioretinopathy 1 Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
TUBGCP6(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
mucopolysaccharidosis type 3C Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
HGSNAT(6)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Bosch-boonstra-schaaf optic atrophy syndrome Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
NR2F1(5)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
CACNA2D4-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Retinitis pigmentosa retinitis pigmentosa 18
1 gene
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1 of 1 corroborated by 2+ sources
PRPF3(7)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Retinitis pigmentosa retinitis pigmentosa 27
1 gene
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1 of 1 corroborated by 2+ sources
NRL(7)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →
Retinitis pigmentosa retinitis pigmentosa 86
1 gene
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1 of 1 corroborated by 2+ sources
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →
Retinitis pigmentosa retinitis pigmentosa 9
1 gene
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1 of 1 corroborated by 2+ sources
RP9(6)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →
Retinitis pigmentosa Retinitis pigmentosa and erythrocytic microcytosis
1 gene
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1 of 1 corroborated by 2+ sources
TRNT1(5)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Retinitis pigmentosa Retinitis pigmentosa with or without situs inversus
1 gene
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1 of 1 corroborated by 2+ sources
ARL2BP(6)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Retinitis pigmentosa Retinitis pigmentosa, hearing loss, premature aging, short stature, facial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EXOSC2(5)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Retinitis pigmentosa Sideroblastic anemia with b-cell immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
TRNT1(6)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Retinitis pigmentosa snowflake vitreoretinal degeneration
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ13(3)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.