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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cerebrocostomandibular syndrome Stomach neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
SNRPB(6)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
immunodeficiency, common variable, 10 Uterine fibroid
1 gene
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1 of 1 corroborated by 2+ sources
NFKB2(2)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
Isobutyryl-coa dehydrogenase deficiency Stomach neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
ACAD8(3)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. Cluster 5 →
KCND2-related neurodevelopmental disorder with or without seizures Uterine fibroid
1 gene
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1 of 1 corroborated by 2+ sources
KCND2(2)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
primordial dwarfism-immunodeficiency-lipodystrophy syndrome Uterine fibroid
1 gene
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1 of 1 corroborated by 2+ sources
PRIM1(2)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
Congenital alpha-fetoprotein deficiency Stomach neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
AFP(3)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
Anterior pituitary function deficiency with variable immunodeficiency Uterine fibroid
1 gene
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1 of 1 corroborated by 2+ sources
NFKB2(3)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
Liver failure Tessadori-van haaften neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
H4C1(2)
0.017 0.167 2.01e-2 2.19e-2 ✓ sig. —
3m syndrome Spinocerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
CCDC8(4)
0.009 0.333 2.01e-2 2.19e-2 ✓ sig. Cluster 79 →
Cole-carpenter syndrome Spinocerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
P4HB(6)
0.009 0.333 2.01e-2 2.19e-2 ✓ sig. —
2,4-dienoyl-coa reductase deficiency Liver disease
1 gene
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1 of 1 corroborated by 2+ sources
DECR1(3)
0.006 0.500 2.03e-2 2.21e-2 ✓ sig. —
Aicardi syndrome Liver disease
1 gene
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1 of 1 corroborated by 2+ sources
TEAD1(2)
0.006 0.500 2.03e-2 2.21e-2 ✓ sig. —
Liver disease Sveinsson chorioretinal atrophy
1 gene
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1 of 1 corroborated by 2+ sources
TEAD1(4)
0.006 0.500 2.03e-2 2.21e-2 ✓ sig. —
Liver disease Primary microcephaly-mild intellectual disability-young-onset diabetes syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TRMT10A(3)
0.006 0.500 2.03e-2 2.21e-2 ✓ sig. —
Advanced sleep phase syndrome Bipolar depression
1 gene
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1 of 1 corroborated by 2+ sources
PER3(2)
0.009 0.333 2.03e-2 2.21e-2 ✓ sig. —
Behcet disease Interferon gamma receptor deficiency
1 gene
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1 of 1 corroborated by 2+ sources
IFNGR1(3)
0.009 0.333 2.03e-2 2.21e-2 ✓ sig. —
Ankylosing spondylitis El-hayek-chahrour neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KDM5A(4)
0.003 1.000 2.03e-2 2.21e-2 ✓ sig. —
Ankylosing spondylitis Xy gonadal dysgenesis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PPP2R3C(2)
0.003 1.000 2.03e-2 2.21e-2 ✓ sig. —
Ankylosing spondylitis Autoinflammation and autoimmunity, systemic, with immune dysregulation 1
1 gene
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1 of 1 corroborated by 2+ sources
COPA(2)
0.003 1.000 2.03e-2 2.21e-2 ✓ sig. —
Ankylosing spondylitis Autoinflammation with pulmonary and cutaneous vasculitis
1 gene
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1 of 1 corroborated by 2+ sources
HCK(4)
0.003 1.000 2.03e-2 2.21e-2 ✓ sig. —
Ankylosing spondylitis combined immunodeficiency due to OX40 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TNFRSF4(2)
0.003 1.000 2.03e-2 2.21e-2 ✓ sig. —
Ankylosing spondylitis scott syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANO6(3)
0.003 1.000 2.03e-2 2.21e-2 ✓ sig. —
hereditary spastic paraplegia 62 Nonalcoholic fatty liver disease
1 gene
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1 of 1 corroborated by 2+ sources
ERLIN1(2)
0.003 1.000 2.05e-2 2.23e-2 ✓ sig. —
Carboxypeptidase n deficiency Nonalcoholic fatty liver disease
1 gene
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1 of 1 corroborated by 2+ sources
CPN1(4)
0.003 1.000 2.05e-2 2.23e-2 ✓ sig. —
methylmalonic aciduria and homocystinuria type cblF Nonalcoholic fatty liver disease
1 gene
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1 of 1 corroborated by 2+ sources
LMBRD1(2)
0.003 1.000 2.05e-2 2.23e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.