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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Developmental delay with or without intellectual or behavioral abnormalities Nonsyndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
TAOK1(4)
0.007 0.500 1.82e-2 1.99e-2 ✓ sig. —
Acetyl-coa acetyltransferase deficiency Seizures
1 gene
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1 of 1 corroborated by 2+ sources
ACAT1(3)
0.007 0.500 1.82e-2 1.99e-2 ✓ sig. —
Hypertyrosinemia Motor neuron disease
1 gene
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1 of 1 corroborated by 2+ sources
ALS2(2)
0.013 0.250 1.83e-2 2.00e-2 ✓ sig. —
Glycine encephalopathy Osteosarcoma
1 gene
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1 of 1 corroborated by 2+ sources
GLDC(8)
0.016 0.200 1.84e-2 2.01e-2 ✓ sig. —
Congenital cataract hearing loss developmental delay syndrome Developmental disability
1 gene
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1 of 1 corroborated by 2+ sources
SLC33A1(3)
0.007 0.500 1.85e-2 2.02e-2 ✓ sig. —
Multiple myeloma Thyroid hormone metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
DIO1(3)
0.007 0.500 1.85e-2 2.02e-2 ✓ sig. —
Developmental disability Intellectual developmental disorder dysmorphic ptosis
1 gene
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1 of 1 corroborated by 2+ sources
BRPF1(5)
0.007 0.500 1.85e-2 2.02e-2 ✓ sig. —
adult neuronal ceroid lipofuscinosis Developmental disability
1 gene
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1 of 1 corroborated by 2+ sources
CTSF(2)
0.007 0.500 1.85e-2 2.02e-2 ✓ sig. —
Lewis lung carcinoma Mesothelioma
1 gene
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TXNRD1(1)
0.007 0.500 1.87e-2 2.05e-2 ✓ sig. —
Ankle fracture Osteoporosis
1 gene
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WNT16(1)
0.007 0.500 1.89e-2 2.06e-2 ✓ sig. —
Diaphragm disease Osteoporosis
1 gene
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1 of 1 corroborated by 2+ sources
WNT3A(2)
0.007 0.500 1.89e-2 2.06e-2 ✓ sig. —
Heart disease Rib fracture
1 gene
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TENM2(1)
0.007 0.500 1.89e-2 2.06e-2 ✓ sig. —
Colorectal neoplasms extraoral halitosis due to methanethiol oxidase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
0.003 1.000 1.89e-2 2.06e-2 ✓ sig. Cluster 5 →
Blepharophimosis-ptosis-epicanthus inversus syndrome Colorectal neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
FOXL2(6)
0.003 1.000 1.89e-2 2.06e-2 ✓ sig. —
Colorectal neoplasms Dna replication fork stabilization factor donson-related microcephaly, short stature, limb abnormalities spectrum
1 gene
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1 of 1 corroborated by 2+ sources
DONSON(2)
0.003 1.000 1.89e-2 2.06e-2 ✓ sig. —
Colorectal neoplasms DPAGT1-congenital disorder of glycosylation
1 gene
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1 of 1 corroborated by 2+ sources
DPAGT1(2)
0.003 1.000 1.89e-2 2.06e-2 ✓ sig. —
Colorectal neoplasms Duodenal atresia
1 gene
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1 of 1 corroborated by 2+ sources
GUCY2C(2)
0.003 1.000 1.89e-2 2.06e-2 ✓ sig. —
Colorectal neoplasms Enteropathy
1 gene
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1 of 1 corroborated by 2+ sources
SLCO2A1(3)
0.003 1.000 1.89e-2 2.06e-2 ✓ sig. —
Colorectal neoplasms Intellectual developmental disorder autism speech dysmorphic
1 gene
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1 of 1 corroborated by 2+ sources
CHD1(2)
0.003 1.000 1.89e-2 2.06e-2 ✓ sig. —
Chronic infantile diarrhea due to guanylate cyclase 2c overactivity Colorectal neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
GUCY2C(3)
0.003 1.000 1.89e-2 2.06e-2 ✓ sig. —
Colorectal neoplasms Parenti-mignot neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHD5(5)
0.003 1.000 1.89e-2 2.06e-2 ✓ sig. —
Colorectal neoplasms PGM1-congenital disorder of glycosylation
1 gene
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1 of 1 corroborated by 2+ sources
PGM1(2)
0.003 1.000 1.89e-2 2.06e-2 ✓ sig. —
Estrogen-receptor negative breast cancer glycosylphosphatidylinositol biosynthesis defect 17
1 gene
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1 of 1 corroborated by 2+ sources
PIGH(2)
0.003 1.000 1.92e-2 2.10e-2 ✓ sig. —
Estrogen-receptor negative breast cancer snijders blok-campeau syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHD3(2)
0.003 1.000 1.92e-2 2.10e-2 ✓ sig. —
Estrogen-receptor negative breast cancer Uric acid urolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
ZNF365(2)
0.003 1.000 1.92e-2 2.10e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.