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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
foveal hypoplasia - optic nerve decussation defect - anterior segment dysgenesis syndrome Liver cirrhosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC38A8(2)
0.004 1.000 1.71e-2 1.88e-2 ✓ sig. —
glycogen storage disease IXc Liver cirrhosis
1 gene
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1 of 1 corroborated by 2+ sources
PHKG2(2)
0.004 1.000 1.71e-2 1.88e-2 ✓ sig. —
Brain calcification Liver cirrhosis
1 gene
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FARSB(1)
0.004 1.000 1.71e-2 1.88e-2 ✓ sig. —
Intellectual developmental disorder dysmorphic brain Liver cirrhosis
1 gene
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1 of 1 corroborated by 2+ sources
TRAPPC9(4)
0.004 1.000 1.71e-2 1.88e-2 ✓ sig. —
Kleine-levin syndrome Microphthalmia
1 gene
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1 of 1 corroborated by 2+ sources
NAA10(6)
0.022 0.143 1.72e-2 1.88e-2 ✓ sig. —
Angiokeratoma Intellectual developmental disorder, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
GLA(2)
0.011 0.333 1.72e-2 1.89e-2 ✓ sig. —
Aplasia cutis-enamel dysplasia syndrome Juvenile idiopathic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
FOSL2(4)
0.004 1.000 1.73e-2 1.89e-2 ✓ sig. —
Congenital scalp aplasia cutis-enamel hypoplasia-developmental delay-intellectual disability syndrome Juvenile idiopathic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
FOSL2(2)
0.004 1.000 1.73e-2 1.89e-2 ✓ sig. —
cardiomyopathy, dilated, 2k Juvenile idiopathic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
MYZAP(2)
0.004 1.000 1.73e-2 1.89e-2 ✓ sig. Cluster 311 →
fanconi anemia complementation group l Juvenile idiopathic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
FANCL(2)
0.004 1.000 1.73e-2 1.89e-2 ✓ sig. —
combined immunodeficiency due to moesin deficiency Juvenile idiopathic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
MSN(2)
0.004 1.000 1.73e-2 1.89e-2 ✓ sig. —
Glycinuria with/without oxalate urolithiasis Hirschsprung disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A20(2)
0.014 0.250 1.73e-2 1.90e-2 ✓ sig. —
Irritable bowel syndrome Patellar tendinitis
1 gene
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STK17A(1)
0.007 0.500 1.73e-2 1.90e-2 ✓ sig. Cluster 2 →
immunodeficiency-centromeric instability-facial anomalies syndrome 3 Ovarian serous carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
CDCA7(2)
0.004 1.000 1.75e-2 1.92e-2 ✓ sig. —
Laryngeal hypoplasia Ovarian serous carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
FOXP4(2)
0.004 1.000 1.75e-2 1.92e-2 ✓ sig. —
autosomal recessive osteopetrosis 6 Ovarian serous carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
PLEKHM1(2)
0.004 1.000 1.75e-2 1.92e-2 ✓ sig. —
osteopetrosis, autosomal dominant 3 Ovarian serous carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
PLEKHM1(2)
0.004 1.000 1.75e-2 1.92e-2 ✓ sig. —
16p13.2 microdeletion syndrome Ovarian serous carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
USP7(2)
0.004 1.000 1.75e-2 1.92e-2 ✓ sig. —
Ovarian serous carcinoma Short telomere syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ACD(3)
0.004 1.000 1.75e-2 1.92e-2 ✓ sig. —
Ovarian serous carcinoma snijders blok-campeau syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHD3(2)
0.004 1.000 1.75e-2 1.92e-2 ✓ sig. —
hao-fountain syndrome Ovarian serous carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
USP7(2)
0.004 1.000 1.75e-2 1.92e-2 ✓ sig. —
Deafness, encephaloneuropathy, obesity, valvulopathy syndrome Ovarian serous carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
PDSS1(4)
0.004 1.000 1.75e-2 1.92e-2 ✓ sig. —
Danon disease Dilated cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
LAMP2(5)
0.004 1.000 1.77e-2 1.94e-2 ✓ sig. —
Dilated cardiomyopathy immunodeficiency 109 with lymphoproliferation
1 gene
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1 of 1 corroborated by 2+ sources
TNFRSF9(3)
0.004 1.000 1.77e-2 1.94e-2 ✓ sig. —
arrhythmogenic cardiomyopathy with variable ectodermal abnormalities Dilated cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
0.004 1.000 1.77e-2 1.94e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.