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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
neurodevelopmental disorder with cardiomyopathy, spasticity, and brain abnormalities Obsessive-compulsive disorder
1 gene
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1 of 1 corroborated by 2+ sources
SHMT2(2)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. Cluster 69 →
Diabetic neuropathy Neurogenic bladder
1 gene
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1 of 1 corroborated by 2+ sources
CHRM2(2)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
Glaucoma neuropathy, hereditary sensory and autonomic, type 1A
1 gene
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1 of 1 corroborated by 2+ sources
SPTLC1(2)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
Glaucoma obsolete glaucoma 1, open angle, F
1 gene
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1 of 1 corroborated by 2+ sources
ASB10(5)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. Cluster 240 →
Glaucoma Inflammatory demyelinating polyneuropathy
1 gene
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CNBD1(1)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
jalili syndrome Obsessive-compulsive disorder
1 gene
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1 of 1 corroborated by 2+ sources
CNNM4(2)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
KIZ-related retinopathy Obsessive-compulsive disorder
1 gene
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1 of 1 corroborated by 2+ sources
KIZ(2)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
Diabetic neuropathy Winkelman bethge pfeiffer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LHX3(2)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
congenital muscular dystrophy with intellectual disability and severe epilepsy Glaucoma
1 gene
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1 of 1 corroborated by 2+ sources
DPM2(2)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
Diets-jongmans syndrome Obsessive-compulsive disorder
1 gene
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1 of 1 corroborated by 2+ sources
KDM3B(5)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
Autoinflammation, immune dysregulation, and eosinophilia Diabetic neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
JAK1(5)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
Diabetic neuropathy Perlman syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DIS3L2(5)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. Cluster 73 →
Glaucoma PRPF8-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
PRPF8(3)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
Obsessive-compulsive disorder psychomotor regression-oculomotor apraxia-movement disorder-nephropathy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC30A9(2)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
focal segmental glomerulosclerosis and neurodevelopmental syndrome Obsessive-compulsive disorder
1 gene
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1 of 1 corroborated by 2+ sources
TRIM8(2)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
Glaucoma glaucoma, normal tension, susceptibility to
1 gene
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1 of 1 corroborated by 2+ sources
OPTN(6)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
Biliary tract cancer Lafora disease
1 gene
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1 of 1 corroborated by 2+ sources
NHLRC1(5)
0.008 0.500 1.53e-2 1.69e-2 ✓ sig. —
Deafness-infertility syndrome Nonsyndromic hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
STRC(6)
0.008 0.500 1.53e-2 1.69e-2 ✓ sig. Cluster 26 →
Developmental delay with or without intellectual or behavioral abnormalities Nonsyndromic hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
TRRAP(4)
0.008 0.500 1.53e-2 1.69e-2 ✓ sig. —
Developmental delay with or without intellectual or behavioral abnormalities Isolated sensorineural deafness
1 gene
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1 of 1 corroborated by 2+ sources
TRRAP(4)
0.008 0.500 1.54e-2 1.70e-2 ✓ sig. —
Atherosclerosis Childhood kidney wilms tumor
1 gene
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1 of 1 corroborated by 2+ sources
TRIM28(3)
0.008 0.500 1.54e-2 1.70e-2 ✓ sig. —
Complex regional pain syndrome Congenital nasopharyngeal atresia
1 gene
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1 of 1 corroborated by 2+ sources
SPAG1(2)
0.026 0.125 1.55e-2 1.71e-2 ✓ sig. —
Brain injuries Cystic fibrosis-related diabetes
1 gene
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1 of 1 corroborated by 2+ sources
CEBPB(2)
0.012 0.333 1.55e-2 1.71e-2 ✓ sig. —
Aortic valve stenosis Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
HACE1(3)
0.008 0.500 1.55e-2 1.71e-2 ✓ sig. —
Congenital cataract hearing loss developmental delay syndrome Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
SLC33A1(4)
0.008 0.500 1.55e-2 1.71e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.