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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
neurodevelopmental disorder with or without variable brain abnormalities; NEDBA Polycystic ovary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
Ovarian teratoma Polycystic ovary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BMP15(3)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
immunodeficiency 126, susceptibility to Polycystic ovary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PTCRA(3)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
immunodeficiency-centromeric instability-facial anomalies syndrome 4 Polycystic ovary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HELLS(3)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
cardiomyopathy, dilated, 2g Polycystic ovary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LMOD2(2)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
Cervical cancer macrothrombocytopenia-lymphedema-developmental delay-facial dysmorphism-camptodactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CDC42(2)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
meier-gorlin syndrome 5 Polycystic ovary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CDC6(3)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
Microscopic polyangiitis Polycystic ovary syndrome
1 gene
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CDH19(1)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
Adult-onset proximal spinal muscular atrophy Cervical cancer
1 gene
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1 of 1 corroborated by 2+ sources
VAPB(2)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
amyotrophic lateral sclerosis type 8 Cervical cancer
1 gene
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1 of 1 corroborated by 2+ sources
VAPB(2)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
dyskeratosis congenita and related telomere biology disorder Polycystic ovary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RPA1(2)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
hermansky-pudlak syndrome 8 Polycystic ovary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BLOC1S3(3)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
Congenital lipoid adrenal hyperplasia Polycystic ovary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
STAR(5)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
Cerebellar ataxia Neuroocular syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DAGLA(2)
0.009 0.500 1.48e-2 1.64e-2 ✓ sig. —
Canavan disease Premature ovarian failure
1 gene
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1 of 1 corroborated by 2+ sources
SPATA22(3)
0.009 0.500 1.48e-2 1.64e-2 ✓ sig. —
Intellectual developmental disorder dysmorphic ptosis Spermatogenic failure
1 gene
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1 of 1 corroborated by 2+ sources
RPL10L(4)
0.009 0.500 1.48e-2 1.64e-2 ✓ sig. —
Peripheral neuropathy, autosomal recessive, with or without impaired intellectual development Premature ovarian failure
1 gene
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PNPLA7(1)
0.009 0.500 1.48e-2 1.64e-2 ✓ sig. —
Bronchopneumonia Urticaria
1 gene
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CBLB(1)
0.020 0.200 1.48e-2 1.65e-2 ✓ sig. —
Congenital neurologic anomalies Primary microcephaly-mild intellectual disability-young-onset diabetes syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TRMT10A(3)
0.009 0.500 1.49e-2 1.65e-2 ✓ sig. —
Childhood kidney wilms tumor Ovarian epithelial cancer
1 gene
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1 of 1 corroborated by 2+ sources
CTR9(2)
0.009 0.500 1.49e-2 1.65e-2 ✓ sig. —
Ovarian epithelial cancer Sarcoglycanopathies
1 gene
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1 of 1 corroborated by 2+ sources
SGCG(2)
0.009 0.500 1.49e-2 1.65e-2 ✓ sig. —
Myoadenylate deaminase deficiency Ovarian epithelial cancer
1 gene
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1 of 1 corroborated by 2+ sources
AMPD1(2)
0.009 0.500 1.49e-2 1.65e-2 ✓ sig. —
Congenital neurologic anomalies Intellectual developmental disorder seizures speech
1 gene
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NTNG2(1)
0.009 0.500 1.49e-2 1.65e-2 ✓ sig. —
Congenital neurologic anomalies Lafora disease
1 gene
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1 of 1 corroborated by 2+ sources
EPM2A(4)
0.009 0.500 1.49e-2 1.65e-2 ✓ sig. —
Lafora disease Ovarian epithelial cancer
1 gene
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1 of 1 corroborated by 2+ sources
EPM2A(5)
0.009 0.500 1.49e-2 1.65e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.