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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Developmental and epileptic encephalopathy developmental and epileptic encephalopathy, 55
1 gene
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1 of 1 corroborated by 2+ sources
PIGP(6)
0.005 1.000 1.43e-2 1.59e-2 ✓ sig. Cluster 6 →
Developmental and epileptic encephalopathy developmental and epileptic encephalopathy, 77
1 gene
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1 of 1 corroborated by 2+ sources
PIGQ(5)
0.005 1.000 1.43e-2 1.59e-2 ✓ sig. Cluster 6 →
Developmental and epileptic encephalopathy developmental and epileptic encephalopathy, 80
1 gene
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1 of 1 corroborated by 2+ sources
PIGB(5)
0.005 1.000 1.43e-2 1.59e-2 ✓ sig. —
Developmental and epileptic encephalopathy Developmental delay and seizures
1 gene
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1 of 1 corroborated by 2+ sources
DHDDS(5)
0.005 1.000 1.43e-2 1.59e-2 ✓ sig. —
Developmental and epileptic encephalopathy DHDDS-CDG
1 gene
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1 of 1 corroborated by 2+ sources
DHDDS(4)
0.005 1.000 1.43e-2 1.59e-2 ✓ sig. —
Developmental and epileptic encephalopathy focal segmental glomerulosclerosis and neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TRIM8(3)
0.005 1.000 1.43e-2 1.59e-2 ✓ sig. —
Developmental and epileptic encephalopathy frontotemporal dementia and/or amyotrophic lateral sclerosis 5
1 gene
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1 of 1 corroborated by 2+ sources
CCNF(2)
0.005 1.000 1.43e-2 1.59e-2 ✓ sig. —
Developmental and epileptic encephalopathy Genetic generalized epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
TNK2(2)
0.005 1.000 1.43e-2 1.59e-2 ✓ sig. —
Developmental and epileptic encephalopathy glycosylphosphatidylinositol biosynthesis defect 18
1 gene
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1 of 1 corroborated by 2+ sources
PIGS(3)
0.005 1.000 1.43e-2 1.59e-2 ✓ sig. —
X-linked intellectual disability X-linked syndromic complex neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
AP1S2(3)
0.013 0.333 1.43e-2 1.59e-2 ✓ sig. Cluster 115 →
Hodgkin lymphoma Neuroocular syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PRR12(5)
0.009 0.500 1.44e-2 1.60e-2 ✓ sig. —
Ataxia, spastic, autosomal recessive Keratoconus
1 gene
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1 of 1 corroborated by 2+ sources
KIF1C(3)
0.009 0.500 1.44e-2 1.60e-2 ✓ sig. —
Keratoconus Pancreatic trypsinogen deficiency
1 gene
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TRB(1)
0.009 0.500 1.44e-2 1.60e-2 ✓ sig. —
Deafness-infertility syndrome Male infertility
1 gene
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1 of 1 corroborated by 2+ sources
0.009 0.500 1.44e-2 1.60e-2 ✓ sig. —
Dyslexia Male infertility acephalic spermatozoa
1 gene
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1 of 1 corroborated by 2+ sources
PMFBP1(2)
0.009 0.500 1.44e-2 1.60e-2 ✓ sig. Cluster 179 →
Keratoconus Malonic aciduria
1 gene
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1 of 1 corroborated by 2+ sources
MLYCD(8)
0.009 0.500 1.44e-2 1.60e-2 ✓ sig. —
Chondromalacia Diverticulitis
1 gene
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0.028 0.125 1.45e-2 1.61e-2 ✓ sig. —
Myoadenylate deaminase deficiency Myopathy
1 gene
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1 of 1 corroborated by 2+ sources
AMPD1(2)
0.009 0.500 1.45e-2 1.61e-2 ✓ sig. —
Cerebral atherosclerosis Periodontal disease
1 gene
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1 of 1 corroborated by 2+ sources
KALRN(2)
0.032 0.083 1.47e-2 1.63e-2 ✓ sig. —
Chromosomal disorder Diffuse large b-cell lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
IMMP2L(2)
0.016 0.250 1.47e-2 1.64e-2 ✓ sig. —
Diffuse large b-cell lymphoma Treacher collins syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POLR1D(8)
0.016 0.250 1.47e-2 1.64e-2 ✓ sig. —
Inflammatory skin disease Uncombable hair syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TGM3(6)
0.013 0.333 1.47e-2 1.64e-2 ✓ sig. —
Hypogonadism Rotor syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLCO1B1(4)
0.013 0.333 1.47e-2 1.64e-2 ✓ sig. —
Cervical cancer severe combined immunodeficiency due to CD70 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CD70(2)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
neurodevelopmental disorder with hypotonia, neuropathy, and deafness Polycystic ovary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPTBN4(3)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.