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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Deafness Worster drought syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TMTC4(2)
0.006 1.000 1.12e-2 1.26e-2 ✓ sig. Cluster 26 →
Congenital heart disease fibrodysplasia ossificans progressiva
1 gene
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1 of 1 corroborated by 2+ sources
ACVR1(3)
0.006 1.000 1.12e-2 1.26e-2 ✓ sig. —
Deafness frontotemporal dementia and/or amyotrophic lateral sclerosis 5
1 gene
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1 of 1 corroborated by 2+ sources
CCNF(2)
0.006 1.000 1.12e-2 1.26e-2 ✓ sig. —
Chromosome 15q deletion syndrome Congenital heart disease
1 gene
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1 of 1 corroborated by 2+ sources
MCTP2(3)
0.006 1.000 1.12e-2 1.26e-2 ✓ sig. Cluster 111 →
Chromosome 2p16.1-p15 deletion syndrome Congenital heart disease
1 gene
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1 of 1 corroborated by 2+ sources
USP34(3)
0.006 1.000 1.12e-2 1.26e-2 ✓ sig. —
autosomal recessive nonsyndromic hearing loss 102 Deafness
1 gene
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1 of 1 corroborated by 2+ sources
EPS8(4)
0.006 1.000 1.12e-2 1.26e-2 ✓ sig. Cluster 26 →
autosomal recessive nonsyndromic hearing loss 63 Deafness
1 gene
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1 of 1 corroborated by 2+ sources
LRTOMT(4)
0.006 1.000 1.12e-2 1.26e-2 ✓ sig. Cluster 26 →
Congenital heart disease El-hayek-chahrour neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KDM5A(5)
0.006 1.000 1.12e-2 1.26e-2 ✓ sig. Cluster 111 →
Deafness hearing loss, autosomal recessive 115
1 gene
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1 of 1 corroborated by 2+ sources
SPNS2(3)
0.006 1.000 1.12e-2 1.26e-2 ✓ sig. Cluster 26 →
Deafness hearing loss, autosomal recessive 116
1 gene
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1 of 1 corroborated by 2+ sources
CLDN9(3)
0.006 1.000 1.12e-2 1.26e-2 ✓ sig. —
Deafness hearing loss, autosomal recessive 119
1 gene
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1 of 1 corroborated by 2+ sources
AFG2B(3)
0.006 1.000 1.12e-2 1.26e-2 ✓ sig. —
Deafness hearing loss, autosomal recessive 120
1 gene
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1 of 1 corroborated by 2+ sources
MINAR2(3)
0.006 1.000 1.12e-2 1.26e-2 ✓ sig. Cluster 26 →
Congenital heart disease Pulmonary agenesis
1 gene
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1 of 1 corroborated by 2+ sources
EFNB2(2)
0.006 1.000 1.12e-2 1.26e-2 ✓ sig. —
Congenital heart defect, intellectual disability, facial dysmorphism syndrome Congenital heart disease
1 gene
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1 of 1 corroborated by 2+ sources
CDK13(5)
0.006 1.000 1.12e-2 1.26e-2 ✓ sig. —
Brain aneurysm Trimethylaminuria
1 gene
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1 of 1 corroborated by 2+ sources
FMO4(2)
0.011 0.500 1.13e-2 1.27e-2 ✓ sig. —
Endometrial cancer friedreich ataxia
1 gene
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1 of 1 corroborated by 2+ sources
FXN(2)
0.006 1.000 1.13e-2 1.27e-2 ✓ sig. Cluster 67 →
Growth disorder Uv-sensitive syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ERCC6(6)
0.025 0.200 1.13e-2 1.27e-2 ✓ sig. —
Heterotaxy syndrome Ileocolitis
1 gene
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1 of 1 corroborated by 2+ sources
CFAP45(5)
0.033 0.125 1.14e-2 1.28e-2 ✓ sig. Cluster 46 →
Intermittent porphyria Peripheral arterial disease
1 gene
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1 of 1 corroborated by 2+ sources
HMBS(3)
0.006 1.000 1.15e-2 1.29e-2 ✓ sig. —
Juvenile absence epilepsy Peripheral arterial disease
1 gene
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1 of 1 corroborated by 2+ sources
EFHC1(2)
0.006 1.000 1.15e-2 1.29e-2 ✓ sig. —
Kindler epidermolysis bullosa Skin disease
1 gene
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1 of 1 corroborated by 2+ sources
FERMT1(2)
0.006 1.000 1.15e-2 1.29e-2 ✓ sig. —
kindler syndrome Skin disease
1 gene
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1 of 1 corroborated by 2+ sources
FERMT1(2)
0.006 1.000 1.15e-2 1.29e-2 ✓ sig. —
optic atrophy 13 with retinal and foveal abnormalities Skin disease
1 gene
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1 of 1 corroborated by 2+ sources
SSBP1(3)
0.006 1.000 1.15e-2 1.29e-2 ✓ sig. Cluster 29 →
Congenital cerebellar hypoplasia Peripheral arterial disease
1 gene
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1 of 1 corroborated by 2+ sources
OXR1(3)
0.006 1.000 1.15e-2 1.29e-2 ✓ sig. —
Peripheral arterial disease perrault syndrome 3
1 gene
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1 of 1 corroborated by 2+ sources
CLPP(2)
0.006 1.000 1.15e-2 1.29e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.